NAME

       coordinateTranslate - part of mauveAligner package

SYNOPSIS

       coordinateTranslate <XMFA alignment> <alignment coordinate file>

DESCRIPTION

       Alignment  coordinate  file  should be structured into 2 tab-delimited columns: <block ID>
       <column> Output will be the nearest aligned position for each genome in the block, with  0
       entries for genomes undefined in the block