NAME

       fathom - sequence and annotation tool

SYNOPSIS

       fathom <ann> <dna> <commands>

OPTIONS

       -help  report useful information

       -validate [-quiet]

       -gene-stats [-errors-ok -nucleotide -dinucleotide]

       -categorize <int>

       -export <int> [-plus -errors-ok]

       -extract <feature> -length <int> -offset <int>

       -exon-intron

       -split <-number <int> | -training <float> | -GC <float> | -repeat <float>>

       -ace-format <-gene-method <string> [-dna -extra <string>]>

       -compare-genes <predictions> [-details]

       -score-genes <hmm> [-errors-ok]

       -filter-genes <hmm> -min-score <float> -min-length <int>