NAME

       gapcleaner - Find the most-parsimonious ordering of indels

SYNOPSIS

       gapcleaner <multi-FASTA or Stockholm alignment>

DESCRIPTION

       gapcleaner from FSA 1.15.9

       Find  the  most-parsimonious ordering of indels.  Finds the minimal chain decomposition of
       the POSET of the alignment; this corresponds to  minimizing  the  number  of  gap-openings
       across the sequences.

       Input protein alignment must be in multi-FASTA or Stockholm format.

AUTHOR

       This  manpage was written by Andreas Tille for the Debian distribution and can be used for
       any other usage of the program.