NAME

       garli  -  phylogenetic  analysis  of molecular sequence data using maximum-likelihood (MPI
       version)

SYNOPSIS

       mpirun [MPI OPTIONS] garli-mpi -[# of times to execute config file] [config filename]

DESCRIPTION

       GARLI, Genetic Algorithm for  Rapid  Likelihood  Inference  is  a  program  for  inferring
       phylogenetic trees. Using an approach similar to a classical genetic algorithm, it rapidly
       searches the space of evolutionary  trees  and  model  parameters  to  find  the  solution
       maximizing  the  likelihood  score.  It  implements nucleotide, amino acid and codon-based
       models of sequence evolution, and runs on all platforms. The latest version  adds  support
       for partitioned models and morphology-like datatypes.  This is the MPI version of Garli.

OPTIONS

       -i, --interactive
              interactive mode (allow and/or expect user feedback)

       -b, --batch
              batch mode (do not expect user input) (batch is the default for the version you are
              running)

       -v, --version
              print version information and exit

       -h, --help
              print this help and exit

       -t     run internal tests (requires dataset and config file)

       -V     validate: load config file and data, validate config file, data, starting trees and
              constraint files, print required memory and selected model, then exit

       NOTE:  If  no  config  filename is passed on the command line the program will look in the
       current directory for a file named "garli.conf"

AUTHOR

       This manpage was written by Andreas Tille for the Debian distribution and can be used  for
       any other usage of the program.