NAME

       mia-2dsegshiftperslice - Translate a segmentation by the given amount.

SYNOPSIS

       mia-2dsegshiftperslice -i <in-file> -o <out-file> -S <shift> [options]

DESCRIPTION

       mia-2dsegshiftperslice This program move the segmentation(s) of an image series by using a
       shift that is given on  a  per-slice  base.  The  program  can  be  used  to  correct  the
       segmentation  of  the  images  if  a  linear registration was executed that only applies a
       translation and does not correct the segmentation automatically.

OPTIONS

              -i --in-file=(required, input); string
                     input segmentation set

              -o --out-file=(required, output); string
                     output segmentation set

              -g --image-file=crop
                     output image filename base

              -S --shift=(required); string
                     shift of segmentation - base name

   Help & Info
              -V --verbose=warning
                     verbosity of output, print messages of given level  and  higher  priorities.
                     Supported priorities starting at lowest level are:

                        trace ‐ Function call trace
                        debug ‐ Debug output
                        info ‐ Low level messages
                        message ‐ Normal messages
                        warning ‐ Warnings
                        fail ‐ Report test failures
                        error ‐ Report errors
                        fatal ‐ Report only fatal errors

                 --copyright
                     print copyright information

              -h --help
                     print this help

              -? --usage
                     print a short help

                 --version
                     print the version number and exit

   Processing
                 --threads=-1
                     Maxiumum number of threads to use for processing,This number should be lower
                     or equal to the number of logical  processor  cores  in  the  machine.  (-1:
                     automatic estimation).

EXAMPLE

       Shirt  the  segmentation  given  in  set  segment.set by files shiftXXXX.txt and store the
       result in shifted.set. Note, the numbering of the shiftXXXX.txx files must coincide.

       mia-2dsegshiftperslice -i segment.set -o shifted.set -g shifted -S shift

AUTHOR(s)

       Gert Wollny

COPYRIGHT

       This software is Copyright (c) 1999‐2015 Leipzig, Germany and  Madrid,  Spain.   It  comes
       with   ABSOLUTELY   NO  WARRANTY  and  you  may redistribute it under the terms of the GNU
       GENERAL PUBLIC LICENSE Version 3 (or later). For more information run the program with the
       option '--copyright'.