Provided by: openmpi-bin_4.1.5-3ubuntu1_amd64 
NAME
orterun, mpirun, mpiexec - Execute serial and parallel jobs in Open MPI. oshrun, shmemrun
- Execute serial and parallel jobs in Open SHMEM.
Note: mpirun, mpiexec, and orterun are all synonyms for each other as well as oshrun,
shmemrun in case Open SHMEM is installed. Using any of the names will produce the same
behavior.
SYNOPSIS
Single Process Multiple Data (SPMD) Model:
mpirun [ options ] <program> [ <args> ]
Multiple Instruction Multiple Data (MIMD) Model:
mpirun [ global_options ]
[ local_options1 ] <program1> [ <args1> ] :
[ local_options2 ] <program2> [ <args2> ] :
... :
[ local_optionsN ] <programN> [ <argsN> ]
Note that in both models, invoking mpirun via an absolute path name is equivalent to
specifying the --prefix option with a <dir> value equivalent to the directory where mpirun
resides, minus its last subdirectory. For example:
% /usr/local/bin/mpirun ...
is equivalent to
% mpirun --prefix /usr/local
QUICK SUMMARY
If you are simply looking for how to run an MPI application, you probably want to use a
command line of the following form:
% mpirun [ -np X ] [ --hostfile <filename> ] <program>
This will run X copies of <program> in your current run-time environment (if running under
a supported resource manager, Open MPI's mpirun will usually automatically use the
corresponding resource manager process starter, as opposed to, for example, rsh or ssh,
which require the use of a hostfile, or will default to running all X copies on the
localhost), scheduling (by default) in a round-robin fashion by CPU slot. See the rest of
this page for more details.
Please note that mpirun automatically binds processes as of the start of the v1.8 series.
Three binding patterns are used in the absence of any further directives:
Bind to core: when the number of processes is <= 2
Bind to socket: when the number of processes is > 2
Bind to none: when oversubscribed
If your application uses threads, then you probably want to ensure that you are either not
bound at all (by specifying --bind-to none), or bound to multiple cores using an
appropriate binding level or specific number of processing elements per application
process.
DEFINITION OF 'SLOT'
The term "slot" is used extensively in the rest of this manual page. A slot is an
allocation unit for a process. The number of slots on a node indicate how many processes
can potentially execute on that node. By default, Open MPI will allow one process per
slot.
If Open MPI is not explicitly told how many slots are available on a node (e.g., if a
hostfile is used and the number of slots is not specified for a given node), it will
determine a maximum number of slots for that node in one of two ways:
1. Default behavior
By default, Open MPI will attempt to discover the number of processor cores on the
node, and use that as the number of slots available.
2. When --use-hwthread-cpus is used
If --use-hwthread-cpus is specified on the mpirun command line, then Open MPI will
attempt to discover the number of hardware threads on the node, and use that as the
number of slots available.
This default behavior also occurs when specifying the -host option with a single host.
Thus, the command:
mpirun --host node1 ./a.out
launches a number of processes equal to the number of cores on node node1, whereas:
mpirun --host node1 --use-hwthread-cpus ./a.out
launches a number of processes equal to the number of hardware threads on node1.
When Open MPI applications are invoked in an environment managed by a resource manager
(e.g., inside of a SLURM job), and Open MPI was built with appropriate support for that
resource manager, then Open MPI will be informed of the number of slots for each node by
the resource manager. For example:
mpirun ./a.out
launches one process for every slot (on every node) as dictated by the resource
manager job specification.
Also note that the one-process-per-slot restriction can be overridden in unmanaged
environments (e.g., when using hostfiles without a resource manager) if oversubscription
is enabled (by default, it is disabled). Most MPI applications and HPC environments do
not oversubscribe; for simplicity, the majority of this documentation assumes that
oversubscription is not enabled.
Slots are not hardware resources
Slots are frequently incorrectly conflated with hardware resources. It is important to
realize that slots are an entirely different metric than the number (and type) of hardware
resources available.
Here are some examples that may help illustrate the difference:
1. More processor cores than slots
Consider a resource manager job environment that tells Open MPI that there is a single
node with 20 processor cores and 2 slots available. By default, Open MPI will only let
you run up to 2 processes.
Meaning: you run out of slots long before you run out of processor cores.
2. More slots than processor cores
Consider a hostfile with a single node listed with a "slots=50" qualification. The
node has 20 processor cores. By default, Open MPI will let you run up to 50 processes.
Meaning: you can run many more processes than you have processor cores.
DEFINITION OF 'PROCESSOR ELEMENT'
By default, Open MPI defines that a "processing element" is a processor core. However, if
--use-hwthread-cpus is specified on the mpirun command line, then a "processing element"
is a hardware thread.
OPTIONS
mpirun will send the name of the directory where it was invoked on the local node to each
of the remote nodes, and attempt to change to that directory. See the "Current Working
Directory" section below for further details.
<program> The program executable. This is identified as the first non-recognized argument
to mpirun.
<args> Pass these run-time arguments to every new process. These must always be the
last arguments to mpirun. If an app context file is used, <args> will be
ignored.
-h, --help
Display help for this command
-q, --quiet
Suppress informative messages from orterun during application execution.
-v, --verbose
Be verbose
-V, --version
Print version number. If no other arguments are given, this will also cause
orterun to exit.
-N <num>
Launch num processes per node on all allocated nodes (synonym for npernode).
-display-map, --display-map
Display a table showing the mapped location of each process prior to launch.
-display-allocation, --display-allocation
Display the detected resource allocation.
-output-proctable, --output-proctable
Output the debugger proctable after launch.
-dvm, --dvm
Create a persistent distributed virtual machine (DVM).
-max-vm-size, --max-vm-size <size>
Number of processes to run.
-novm, --novm
Execute without creating an allocation-spanning virtual machine (only start
daemons on nodes hosting application procs).
-hnp, --hnp <arg0>
Specify the URI of the Head Node Process (HNP), or the name of the file
(specified as file:filename) that contains that info.
Use one of the following options to specify which hosts (nodes) of the cluster to run on.
Note that as of the start of the v1.8 release, mpirun will launch a daemon onto each host
in the allocation (as modified by the following options) at the very beginning of
execution, regardless of whether or not application processes will eventually be mapped to
execute there. This is done to allow collection of hardware topology information from the
remote nodes, thus allowing us to map processes against known topology. However, it is a
change from the behavior in prior releases where daemons were only launched after mapping
was complete, and thus only occurred on nodes where application processes would actually
be executing.
-H, -host, --host <host1,host2,...,hostN>
List of hosts on which to invoke processes.
-hostfile, --hostfile <hostfile>
Provide a hostfile to use.
-default-hostfile, --default-hostfile <hostfile>
Provide a default hostfile.
-machinefile, --machinefile <machinefile>
Synonym for -hostfile.
-cpu-set, --cpu-set <list>
Restrict launched processes to the specified logical cpus on each node (comma-
separated list). Note that the binding options will still apply within the
specified envelope - e.g., you can elect to bind each process to only one cpu
within the specified cpu set.
The following options specify the number of processes to launch. Note that none of the
options imply a particular binding policy - e.g., requesting N processes for each socket
does not imply that the processes will be bound to the socket.
-c, -n, --n, -np <#>
Run this many copies of the program on the given nodes. This option indicates that
the specified file is an executable program and not an application context. If no
value is provided for the number of copies to execute (i.e., neither the "-np" nor
its synonyms are provided on the command line), Open MPI will automatically execute
a copy of the program on each process slot (see below for description of a "process
slot"). This feature, however, can only be used in the SPMD model and will return
an error (without beginning execution of the application) otherwise.
—map-by ppr:N:<object>
Launch N times the number of objects of the specified type on each node.
-npersocket, --npersocket <#persocket>
On each node, launch this many processes times the number of processor sockets on
the node. The -npersocket option also turns on the -bind-to-socket option.
(deprecated in favor of --map-by ppr:n:socket)
-npernode, --npernode <#pernode>
On each node, launch this many processes. (deprecated in favor of --map-by
ppr:n:node)
-pernode, --pernode
On each node, launch one process -- equivalent to -npernode 1. (deprecated in
favor of --map-by ppr:1:node)
To map processes:
--map-by <foo>
Map to the specified object, defaults to socket. Supported options include slot,
hwthread, core, L1cache, L2cache, L3cache, socket, numa, board, node, sequential,
distance, and ppr. Any object can include modifiers by adding a : and any
combination of PE=n (bind n processing elements to each proc), SPAN (load balance
the processes across the allocation), OVERSUBSCRIBE (allow more processes on a node
than processing elements), and NOOVERSUBSCRIBE. This includes PPR, where the
pattern would be terminated by another colon to separate it from the modifiers.
-bycore, --bycore
Map processes by core (deprecated in favor of --map-by core)
-byslot, --byslot
Map and rank processes round-robin by slot.
-nolocal, --nolocal
Do not run any copies of the launched application on the same node as orterun is
running. This option will override listing the localhost with --host or any other
host-specifying mechanism.
-nooversubscribe, --nooversubscribe
Do not oversubscribe any nodes; error (without starting any processes) if the
requested number of processes would cause oversubscription. This option implicitly
sets "max_slots" equal to the "slots" value for each node. (Enabled by default).
-oversubscribe, --oversubscribe
Nodes are allowed to be oversubscribed, even on a managed system, and overloading
of processing elements.
-bynode, --bynode
Launch processes one per node, cycling by node in a round-robin fashion. This
spreads processes evenly among nodes and assigns MPI_COMM_WORLD ranks in a round-
robin, "by node" manner.
-cpu-list, --cpu-list <cpus>
Comma-delimited list of processor IDs to which to bind processes [default=NULL].
Processor IDs are interpreted as hwloc logical core IDs. Run the hwloc lstopo(1)
command to see a list of available cores and their logical IDs.
To order processes' ranks in MPI_COMM_WORLD:
--rank-by <foo>
Rank in round-robin fashion according to the specified object, defaults to slot.
Supported options include slot, hwthread, core, L1cache, L2cache, L3cache, socket,
numa, board, and node.
For process binding:
--bind-to <foo>
Bind processes to the specified object, defaults to core. Supported options include
slot, hwthread, core, l1cache, l2cache, l3cache, socket, numa, board, cpu-list, and
none.
-cpus-per-proc, --cpus-per-proc <#perproc>
Bind each process to the specified number of cpus. (deprecated in favor of --map-
by <obj>:PE=n)
-cpus-per-rank, --cpus-per-rank <#perrank>
Alias for -cpus-per-proc. (deprecated in favor of --map-by <obj>:PE=n)
-bind-to-core, --bind-to-core
Bind processes to cores (deprecated in favor of --bind-to core)
-bind-to-socket, --bind-to-socket
Bind processes to processor sockets (deprecated in favor of --bind-to socket)
-report-bindings, --report-bindings
Report any bindings for launched processes.
For rankfiles:
-rf, --rankfile <rankfile>
Provide a rankfile file.
To manage standard I/O:
-output-filename, --output-filename <filename>
Redirect the stdout, stderr, and stddiag of all processes to a process-unique
version of the specified filename. Any directories in the filename will
automatically be created. Each output file will consist of filename.id, where the
id will be the processes' rank in MPI_COMM_WORLD, left-filled with zero's for
correct ordering in listings. A relative path value will be converted to an
absolute path based on the cwd where mpirun is executed. Note that this will not
work on environments where the file system on compute nodes differs from that where
mpirun is executed.
-stdin, --stdin <rank>
The MPI_COMM_WORLD rank of the process that is to receive stdin. The default is to
forward stdin to MPI_COMM_WORLD rank 0, but this option can be used to forward
stdin to any process. It is also acceptable to specify none, indicating that no
processes are to receive stdin.
-merge-stderr-to-stdout, --merge-stderr-to-stdout
Merge stderr to stdout for each process.
-tag-output, --tag-output
Tag each line of output to stdout, stderr, and stddiag with [jobid,
MCW_rank]<stdxxx> indicating the process jobid and MPI_COMM_WORLD rank of the
process that generated the output, and the channel which generated it.
-timestamp-output, --timestamp-output
Timestamp each line of output to stdout, stderr, and stddiag.
-xml, --xml
Provide all output to stdout, stderr, and stddiag in an xml format.
-xml-file, --xml-file <filename>
Provide all output in XML format to the specified file.
-xterm, --xterm <ranks>
Display the output from the processes identified by their MPI_COMM_WORLD ranks in
separate xterm windows. The ranks are specified as a comma-separated list of
ranges, with a -1 indicating all. A separate window will be created for each
specified process. Note: xterm will normally terminate the window upon termination
of the process running within it. However, by adding a "!" to the end of the list
of specified ranks, the proper options will be provided to ensure that xterm keeps
the window open after the process terminates, thus allowing you to see the process'
output. Each xterm window will subsequently need to be manually closed. Note: In
some environments, xterm may require that the executable be in the user's path, or
be specified in absolute or relative terms. Thus, it may be necessary to specify a
local executable as "./foo" instead of just "foo". If xterm fails to find the
executable, mpirun will hang, but still respond correctly to a ctrl-c. If this
happens, please check that the executable is being specified correctly and try
again.
To manage files and runtime environment:
-path, --path <path>
<path> that will be used when attempting to locate the requested executables. This
is used prior to using the local PATH setting.
--prefix <dir>
Prefix directory that will be used to set the PATH and LD_LIBRARY_PATH on the
remote node before invoking Open MPI or the target process. See the "Remote
Execution" section, below.
--noprefix
Disable the automatic --prefix behavior
-s, --preload-binary
Copy the specified executable(s) to remote machines prior to starting remote
processes. The executables will be copied to the Open MPI session directory and
will be deleted upon completion of the job.
--preload-files <files>
Preload the comma separated list of files to the current working directory of the
remote machines where processes will be launched prior to starting those processes.
-set-cwd-to-session-dir, --set-cwd-to-session-dir
Set the working directory of the started processes to their session directory.
-wd <dir>
Synonym for -wdir.
-wdir <dir>
Change to the directory <dir> before the user's program executes. See the "Current
Working Directory" section for notes on relative paths. Note: If the -wdir option
appears both on the command line and in an application context, the context will
take precedence over the command line. Thus, if the path to the desired wdir is
different on the backend nodes, then it must be specified as an absolute path that
is correct for the backend node.
-x <env>
Export the specified environment variables to the remote nodes before executing the
program. Only one environment variable can be specified per -x option. Existing
environment variables can be specified or new variable names specified with
corresponding values. For example:
% mpirun -x DISPLAY -x OFILE=/tmp/out ...
The parser for the -x option is not very sophisticated; it does not even understand
quoted values. Users are advised to set variables in the environment, and then use
-x to export (not define) them.
Setting MCA parameters:
-gmca, --gmca <key> <value>
Pass global MCA parameters that are applicable to all contexts. <key> is the
parameter name; <value> is the parameter value.
-mca, --mca <key> <value>
Send arguments to various MCA modules. See the "MCA" section, below.
-am <arg0>
Aggregate MCA parameter set file list.
-tune, --tune <tune_file>
Specify a tune file to set arguments for various MCA modules and environment
variables. See the "Setting MCA parameters and environment variables from file"
section, below.
For debugging:
-debug, --debug
Invoke the user-level debugger indicated by the orte_base_user_debugger MCA
parameter.
--get-stack-traces
When paired with the --timeout option, mpirun will obtain and print out stack
traces from all launched processes that are still alive when the timeout expires.
Note that obtaining stack traces can take a little time and produce a lot of
output, especially for large process-count jobs.
-debugger, --debugger <args>
Sequence of debuggers to search for when --debug is used (i.e. a synonym for
orte_base_user_debugger MCA parameter).
--timeout <seconds>
The maximum number of seconds that mpirun (also known as mpiexec, oshrun, orterun,
etc.) will run. After this many seconds, mpirun will abort the launched job and
exit with a non-zero exit status. Using --timeout can be also useful when combined
with the --get-stack-traces option.
-tv, --tv
Launch processes under the TotalView debugger. Deprecated backwards compatibility
flag. Synonym for --debug.
There are also other options:
--allow-run-as-root
Allow mpirun to run when executed by the root user (mpirun defaults to aborting
when launched as the root user). Be sure to see the Running as root section,
below, for more detail.
--app <appfile>
Provide an appfile, ignoring all other command line options.
-cf, --cartofile <cartofile>
Provide a cartography file.
-continuous, --continuous
Job is to run until explicitly terminated.
-disable-recovery, --disable-recovery
Disable recovery (resets all recovery options to off).
-do-not-launch, --do-not-launch
Perform all necessary operations to prepare to launch the application, but do not
actually launch it.
-do-not-resolve, --do-not-resolve
Do not attempt to resolve interfaces.
-enable-recovery, --enable-recovery
Enable recovery from process failure [Default = disabled].
-index-argv-by-rank, --index-argv-by-rank
Uniquely index argv[0] for each process using its rank.
-leave-session-attached, --leave-session-attached
Do not detach OmpiRTE daemons used by this application. This allows error messages
from the daemons as well as the underlying environment (e.g., when failing to
launch a daemon) to be output.
-max-restarts, --max-restarts <num>
Max number of times to restart a failed process.
-ompi-server, --ompi-server <uri or file>
Specify the URI of the Open MPI server (or the mpirun to be used as the server),
the name of the file (specified as file:filename) that contains that info, or the
PID (specified as pid:#) of the mpirun to be used as the server. The Open MPI
server is used to support multi-application data exchange via the MPI-2
MPI_Publish_name and MPI_Lookup_name functions.
-personality, --personality <list>
Comma-separated list of programming model, languages, and containers being used
(default="ompi").
--ppr <list>
Comma-separated list of number of processes on a given resource type [default:
none].
-report-child-jobs-separately, --report-child-jobs-separately
Return the exit status of the primary job only.
-report-events, --report-events <URI>
Report events to a tool listening at the specified URI.
-report-pid, --report-pid <channel>
Print out mpirun's PID during startup. The channel must be either a '-' to indicate
that the pid is to be output to stdout, a '+' to indicate that the pid is to be
output to stderr, or a filename to which the pid is to be written.
-report-uri, --report-uri <channel>
Print out mpirun's URI during startup. The channel must be either a '-' to indicate
that the URI is to be output to stdout, a '+' to indicate that the URI is to be
output to stderr, or a filename to which the URI is to be written.
-show-progress, --show-progress
Output a brief periodic report on launch progress.
-terminate, --terminate
Terminate the DVM.
-use-hwthread-cpus, --use-hwthread-cpus
Use hardware threads as independent CPUs.
Note that if a number of slots is not provided to Open MPI (e.g., via the "slots"
keyword in a hostfile or from a resource manager such as SLURM), the use of this
option changes the default calculation of number of slots on a node. See
"DEFINITION OF 'SLOT'", above.
Also note that the use of this option changes the Open MPI's definition of a
"processor element" from a processor core to a hardware thread. See "DEFINITION OF
'PROCESSOR ELEMENT'", above.
-use-regexp, --use-regexp
Use regular expressions for launch.
The following options are useful for developers; they are not generally useful to most
ORTE and/or MPI users:
-d, --debug-devel
Enable debugging of the OmpiRTE (the run-time layer in Open MPI). This is not
generally useful for most users.
--debug-daemons
Enable debugging of any OmpiRTE daemons used by this application.
--debug-daemons-file
Enable debugging of any OmpiRTE daemons used by this application, storing output in
files.
-display-devel-allocation, --display-devel-allocation
Display a detailed list of the allocation being used by this job.
-display-devel-map, --display-devel-map
Display a more detailed table showing the mapped location of each process prior to
launch.
-display-diffable-map, --display-diffable-map
Display a diffable process map just before launch.
-display-topo, --display-topo
Display the topology as part of the process map just before launch.
-launch-agent, --launch-agent
Name of the executable that is to be used to start processes on the remote nodes.
The default is "orted". This option can be used to test new daemon concepts, or to
pass options back to the daemons without having mpirun itself see them. For
example, specifying a launch agent of orted -mca odls_base_verbose 5 allows the
developer to ask the orted for debugging output without clutter from mpirun itself.
--report-state-on-timeout
When paired with the --timeout command line option, report the run-time subsystem
state of each process when the timeout expires.
There may be other options listed with mpirun --help.
Environment Variables
MPIEXEC_TIMEOUT
Synonym for the --timeout command line option.
DESCRIPTION
One invocation of mpirun starts an MPI application running under Open MPI. If the
application is single process multiple data (SPMD), the application can be specified on
the mpirun command line.
If the application is multiple instruction multiple data (MIMD), comprising of multiple
programs, the set of programs and argument can be specified in one of two ways: Extended
Command Line Arguments, and Application Context.
An application context describes the MIMD program set including all arguments in a
separate file. This file essentially contains multiple mpirun command lines, less the
command name itself. The ability to specify different options for different
instantiations of a program is another reason to use an application context.
Extended command line arguments allow for the description of the application layout on the
command line using colons (:) to separate the specification of programs and arguments.
Some options are globally set across all specified programs (e.g. --hostfile), while
others are specific to a single program (e.g. -np).
Specifying Host Nodes
Host nodes can be identified on the mpirun command line with the -host option or in a
hostfile.
For example,
mpirun -H aa,aa,bb ./a.out
launches two processes on node aa and one on bb.
Or, consider the hostfile
% cat myhostfile
aa slots=2
bb slots=2
cc slots=2
Here, we list both the host names (aa, bb, and cc) but also how many slots there are for
each.
mpirun -hostfile myhostfile ./a.out
will launch two processes on each of the three nodes.
mpirun -hostfile myhostfile -host aa ./a.out
will launch two processes, both on node aa.
mpirun -hostfile myhostfile -host dd ./a.out
will find no hosts to run on and abort with an error. That is, the specified host dd
is not in the specified hostfile.
When running under resource managers (e.g., SLURM, Torque, etc.), Open MPI will obtain
both the hostnames and the number of slots directly from the resource manger.
Specifying Number of Processes
As we have just seen, the number of processes to run can be set using the hostfile. Other
mechanisms exist.
The number of processes launched can be specified as a multiple of the number of nodes or
processor sockets available. For example,
mpirun -H aa,bb -npersocket 2 ./a.out
launches processes 0-3 on node aa and process 4-7 on node bb, where aa and bb are both
dual-socket nodes. The -npersocket option also turns on the -bind-to-socket option,
which is discussed in a later section.
mpirun -H aa,bb -npernode 2 ./a.out
launches processes 0-1 on node aa and processes 2-3 on node bb.
mpirun -H aa,bb -npernode 1 ./a.out
launches one process per host node.
mpirun -H aa,bb -pernode ./a.out
is the same as -npernode 1.
Another alternative is to specify the number of processes with the -np option. Consider
now the hostfile
% cat myhostfile
aa slots=4
bb slots=4
cc slots=4
Now,
mpirun -hostfile myhostfile -np 6 ./a.out
will launch processes 0-3 on node aa and processes 4-5 on node bb. The remaining
slots in the hostfile will not be used since the -np option indicated that only 6
processes should be launched.
Mapping Processes to Nodes: Using Policies
The examples above illustrate the default mapping of process processes to nodes. This
mapping can also be controlled with various mpirun options that describe mapping policies.
Consider the same hostfile as above, again with -np 6:
node aa node bb node cc
mpirun 0 1 2 3 4 5
mpirun --map-by node 0 3 1 4 2 5
mpirun -nolocal 0 1 2 3 4 5
The --map-by node option will load balance the processes across the available nodes,
numbering each process in a round-robin fashion.
The -nolocal option prevents any processes from being mapped onto the local host (in this
case node aa). While mpirun typically consumes few system resources, -nolocal can be
helpful for launching very large jobs where mpirun may actually need to use noticeable
amounts of memory and/or processing time.
Just as -np can specify fewer processes than there are slots, it can also oversubscribe
the slots. For example, with the same hostfile:
mpirun -hostfile myhostfile -np 14 ./a.out
will launch processes 0-3 on node aa, 4-7 on bb, and 8-11 on cc. It will then add the
remaining two processes to whichever nodes it chooses.
One can also specify limits to oversubscription. For example, with the same hostfile:
mpirun -hostfile myhostfile -np 14 -nooversubscribe ./a.out
will produce an error since -nooversubscribe prevents oversubscription.
Limits to oversubscription can also be specified in the hostfile itself:
% cat myhostfile
aa slots=4 max_slots=4
bb max_slots=4
cc slots=4
The max_slots field specifies such a limit. When it does, the slots value defaults to the
limit. Now:
mpirun -hostfile myhostfile -np 14 ./a.out
causes the first 12 processes to be launched as before, but the remaining two
processes will be forced onto node cc. The other two nodes are protected by the
hostfile against oversubscription by this job.
Using the --nooversubscribe option can be helpful since Open MPI currently does not get
"max_slots" values from the resource manager.
Of course, -np can also be used with the -H or -host option. For example,
mpirun -H aa,bb -np 8 ./a.out
launches 8 processes. Since only two hosts are specified, after the first two
processes are mapped, one to aa and one to bb, the remaining processes oversubscribe
the specified hosts.
And here is a MIMD example:
mpirun -H aa -np 1 hostname : -H bb,cc -np 2 uptime
will launch process 0 running hostname on node aa and processes 1 and 2 each running
uptime on nodes bb and cc, respectively.
Mapping, Ranking, and Binding: Oh My!
Open MPI employs a three-phase procedure for assigning process locations and ranks:
mapping Assigns a default location to each process
ranking Assigns an MPI_COMM_WORLD rank value to each process
binding Constrains each process to run on specific processors
The mapping step is used to assign a default location to each process based on the mapper
being employed. Mapping by slot, node, and sequentially results in the assignment of the
processes to the node level. In contrast, mapping by object, allows the mapper to assign
the process to an actual object on each node.
Note: the location assigned to the process is independent of where it will be bound - the
assignment is used solely as input to the binding algorithm.
The mapping of process processes to nodes can be defined not just with general policies
but also, if necessary, using arbitrary mappings that cannot be described by a simple
policy. One can use the "sequential mapper," which reads the hostfile line by line,
assigning processes to nodes in whatever order the hostfile specifies. Use the -mca rmaps
seq option. For example, using the same hostfile as before:
mpirun -hostfile myhostfile -mca rmaps seq ./a.out
will launch three processes, one on each of nodes aa, bb, and cc, respectively. The slot
counts don't matter; one process is launched per line on whatever node is listed on the
line.
Another way to specify arbitrary mappings is with a rankfile, which gives you detailed
control over process binding as well. Rankfiles are discussed below.
The second phase focuses on the ranking of the process within the job's MPI_COMM_WORLD.
Open MPI separates this from the mapping procedure to allow more flexibility in the
relative placement of MPI processes. This is best illustrated by considering the following
two cases where we used the —map-by ppr:2:socket option:
node aa node bb
rank-by core 0 1 ! 2 3 4 5 ! 6 7
rank-by socket 0 2 ! 1 3 4 6 ! 5 7
rank-by socket:span 0 4 ! 1 5 2 6 ! 3 7
Ranking by core and by slot provide the identical result - a simple progression of
MPI_COMM_WORLD ranks across each node. Ranking by socket does a round-robin ranking within
each node until all processes have been assigned an MCW rank, and then progresses to the
next node. Adding the span modifier to the ranking directive causes the ranking algorithm
to treat the entire allocation as a single entity - thus, the MCW ranks are assigned
across all sockets before circling back around to the beginning.
The binding phase actually binds each process to a given set of processors. This can
improve performance if the operating system is placing processes suboptimally. For
example, it might oversubscribe some multi-core processor sockets, leaving other sockets
idle; this can lead processes to contend unnecessarily for common resources. Or, it
might spread processes out too widely; this can be suboptimal if application performance
is sensitive to interprocess communication costs. Binding can also keep the operating
system from migrating processes excessively, regardless of how optimally those processes
were placed to begin with.
The processors to be used for binding can be identified in terms of topological groupings
- e.g., binding to an l3cache will bind each process to all processors within the scope of
a single L3 cache within their assigned location. Thus, if a process is assigned by the
mapper to a certain socket, then a —bind-to l3cache directive will cause the process to be
bound to the processors that share a single L3 cache within that socket.
Alternatively, processes can be assigned to processors based on their local rank on a node
using the --bind-to cpu-list:ordered option with an associated --cpu-list "0,2,5". In this
example, the first process on a node will be bound to cpu 0, the second process on the
node will be bound to cpu 2, and the third process on the node will be bound to cpu 5.
--bind-to will also accept cpulist:ortered as a synonym to cpu-list:ordered. Note that an
error will result if more processes are assigned to a node than cpus are provided.
To help balance loads, the binding directive uses a round-robin method when binding to
levels lower than used in the mapper. For example, consider the case where a job is mapped
to the socket level, and then bound to core. Each socket will have multiple cores, so if
multiple processes are mapped to a given socket, the binding algorithm will assign each
process located to a socket to a unique core in a round-robin manner.
Alternatively, processes mapped by l2cache and then bound to socket will simply be bound
to all the processors in the socket where they are located. In this manner, users can
exert detailed control over relative MCW rank location and binding.
Finally, --report-bindings can be used to report bindings.
As an example, consider a node with two processor sockets, each comprised of four cores,
and each of those cores contains one hardware thread. We run mpirun with -np 4 --report-
bindings and the following additional options:
% mpirun ... --map-by core --bind-to core
[...] ... binding child [...,0] to cpus 0001
[...] ... binding child [...,1] to cpus 0002
[...] ... binding child [...,2] to cpus 0004
[...] ... binding child [...,3] to cpus 0008
% mpirun ... --map-by socket --bind-to socket
[...] ... binding child [...,0] to socket 0 cpus 000f
[...] ... binding child [...,1] to socket 1 cpus 00f0
[...] ... binding child [...,2] to socket 0 cpus 000f
[...] ... binding child [...,3] to socket 1 cpus 00f0
% mpirun ... --map-by slot:PE=2 --bind-to core
[...] ... binding child [...,0] to cpus 0003
[...] ... binding child [...,1] to cpus 000c
[...] ... binding child [...,2] to cpus 0030
[...] ... binding child [...,3] to cpus 00c0
% mpirun ... --bind-to none
Here, --report-bindings shows the binding of each process as a mask. In the first case,
the processes bind to successive cores as indicated by the masks 0001, 0002, 0004, and
0008. In the second case, processes bind to all cores on successive sockets as indicated
by the masks 000f and 00f0. The processes cycle through the processor sockets in a round-
robin fashion as many times as are needed.
In the third case, the masks show us that 2 cores have been bound per process.
Specifically, the mapping by slot with the PE=2 qualifier indicated that each slot (i.e.,
process) should consume two processor elements. Since --use-hwthread-cpus was not
specified, Open MPI defined "processor element" as "core", and therefore the --bind-to
core caused each process to be bound to both of the cores to which it was mapped.
In the fourth case, binding is turned off and no bindings are reported.
Open MPI's support for process binding depends on the underlying operating system.
Therefore, certain process binding options may not be available on every system.
Process binding can also be set with MCA parameters. Their usage is less convenient than
that of mpirun options. On the other hand, MCA parameters can be set not only on the
mpirun command line, but alternatively in a system or user mca-params.conf file or as
environment variables, as described in the MCA section below. Some examples include:
mpirun option MCA parameter key value
--map-by core rmaps_base_mapping_policy core
--map-by socket rmaps_base_mapping_policy socket
--rank-by core rmaps_base_ranking_policy core
--bind-to core hwloc_base_binding_policy core
--bind-to socket hwloc_base_binding_policy socket
--bind-to none hwloc_base_binding_policy none
Rankfiles
Rankfiles are text files that specify detailed information about how individual processes
should be mapped to nodes, and to which processor(s) they should be bound. Each line of a
rankfile specifies the location of one process (for MPI jobs, the process' "rank" refers
to its rank in MPI_COMM_WORLD). The general form of each line in the rankfile is:
rank <N>=<hostname> slot=<slot list>
For example:
$ cat myrankfile
rank 0=aa slot=1:0-2
rank 1=bb slot=0:0,1
rank 2=cc slot=1-2
$ mpirun -H aa,bb,cc,dd -rf myrankfile ./a.out
Means that
Rank 0 runs on node aa, bound to logical socket 1, cores 0-2.
Rank 1 runs on node bb, bound to logical socket 0, cores 0 and 1.
Rank 2 runs on node cc, bound to logical cores 1 and 2.
Rankfiles can alternatively be used to specify physical processor locations. In this case,
the syntax is somewhat different. Sockets are no longer recognized, and the slot number
given must be the number of the physical PU as most OS's do not assign a unique physical
identifier to each core in the node. Thus, a proper physical rankfile looks something like
the following:
$ cat myphysicalrankfile
rank 0=aa slot=1
rank 1=bb slot=8
rank 2=cc slot=6
This means that
Rank 0 will run on node aa, bound to the core that contains physical PU 1
Rank 1 will run on node bb, bound to the core that contains physical PU 8
Rank 2 will run on node cc, bound to the core that contains physical PU 6
Rankfiles are treated as logical by default, and the MCA parameter
rmaps_rank_file_physical must be set to 1 to indicate that the rankfile is to be
considered as physical.
The hostnames listed above are "absolute," meaning that actual resolveable hostnames are
specified. However, hostnames can also be specified as "relative," meaning that they are
specified in relation to an externally-specified list of hostnames (e.g., by mpirun's
--host argument, a hostfile, or a job scheduler).
The "relative" specification is of the form "+n<X>", where X is an integer specifying the
Xth hostname in the set of all available hostnames, indexed from 0. For example:
$ cat myrankfile
rank 0=+n0 slot=1:0-2
rank 1=+n1 slot=0:0,1
rank 2=+n2 slot=1-2
$ mpirun -H aa,bb,cc,dd -rf myrankfile ./a.out
Starting with Open MPI v1.7, all socket/core slot locations are be specified as logical
indexes (the Open MPI v1.6 series used physical indexes). You can use tools such as
HWLOC's "lstopo" to find the logical indexes of socket and cores.
Application Context or Executable Program?
To distinguish the two different forms, mpirun looks on the command line for --app option.
If it is specified, then the file named on the command line is assumed to be an
application context. If it is not specified, then the file is assumed to be an executable
program.
Locating Files
If no relative or absolute path is specified for a file, Open MPI will first look for
files by searching the directories specified by the --path option. If there is no --path
option set or if the file is not found at the --path location, then Open MPI will search
the user's PATH environment variable as defined on the source node(s).
If a relative directory is specified, it must be relative to the initial working directory
determined by the specific starter used. For example when using the rsh or ssh starters,
the initial directory is $HOME by default. Other starters may set the initial directory to
the current working directory from the invocation of mpirun.
Current Working Directory
The -wdir mpirun option (and its synonym, -wd) allows the user to change to an arbitrary
directory before the program is invoked. It can also be used in application context files
to specify working directories on specific nodes and/or for specific applications.
If the -wdir option appears both in a context file and on the command line, the context
file directory will override the command line value.
If the -wdir option is specified, Open MPI will attempt to change to the specified
directory on all of the remote nodes. If this fails, mpirun will abort.
If the -wdir option is not specified, Open MPI will send the directory name where mpirun
was invoked to each of the remote nodes. The remote nodes will try to change to that
directory. If they are unable (e.g., if the directory does not exist on that node), then
Open MPI will use the default directory determined by the starter.
All directory changing occurs before the user's program is invoked; it does not wait until
MPI_INIT is called.
Standard I/O
Open MPI directs UNIX standard input to /dev/null on all processes except the
MPI_COMM_WORLD rank 0 process. The MPI_COMM_WORLD rank 0 process inherits standard input
from mpirun. Note: The node that invoked mpirun need not be the same as the node where
the MPI_COMM_WORLD rank 0 process resides. Open MPI handles the redirection of mpirun's
standard input to the rank 0 process.
Open MPI directs UNIX standard output and error from remote nodes to the node that invoked
mpirun and prints it on the standard output/error of mpirun. Local processes inherit the
standard output/error of mpirun and transfer to it directly.
Thus it is possible to redirect standard I/O for Open MPI applications by using the
typical shell redirection procedure on mpirun.
% mpirun -np 2 my_app < my_input > my_output
Note that in this example only the MPI_COMM_WORLD rank 0 process will receive the stream
from my_input on stdin. The stdin on all the other nodes will be tied to /dev/null.
However, the stdout from all nodes will be collected into the my_output file.
Signal Propagation
When orterun receives a SIGTERM and SIGINT, it will attempt to kill the entire job by
sending all processes in the job a SIGTERM, waiting a small number of seconds, then
sending all processes in the job a SIGKILL.
SIGUSR1 and SIGUSR2 signals received by orterun are propagated to all processes in the
job.
A SIGTSTOP signal to mpirun will cause a SIGSTOP signal to be sent to all of the programs
started by mpirun and likewise a SIGCONT signal to mpirun will cause a SIGCONT sent.
Other signals are not currently propagated by orterun.
Process Termination / Signal Handling
During the run of an MPI application, if any process dies abnormally (either exiting
before invoking MPI_FINALIZE, or dying as the result of a signal), mpirun will print out
an error message and kill the rest of the MPI application.
User signal handlers should probably avoid trying to cleanup MPI state (Open MPI is
currently not async-signal-safe; see MPI_Init_thread(3) for details about
MPI_THREAD_MULTIPLE and thread safety). For example, if a segmentation fault occurs in
MPI_SEND (perhaps because a bad buffer was passed in) and a user signal handler is
invoked, if this user handler attempts to invoke MPI_FINALIZE, Bad Things could happen
since Open MPI was already "in" MPI when the error occurred. Since mpirun will notice
that the process died due to a signal, it is probably not necessary (and safest) for the
user to only clean up non-MPI state.
Process Environment
Processes in the MPI application inherit their environment from the Open RTE daemon upon
the node on which they are running. The environment is typically inherited from the
user's shell. On remote nodes, the exact environment is determined by the boot MCA module
used. The rsh launch module, for example, uses either rsh/ssh to launch the Open RTE
daemon on remote nodes, and typically executes one or more of the user's shell-setup files
before launching the Open RTE daemon. When running dynamically linked applications which
require the LD_LIBRARY_PATH environment variable to be set, care must be taken to ensure
that it is correctly set when booting Open MPI.
See the "Remote Execution" section for more details.
Remote Execution
Open MPI requires that the PATH environment variable be set to find executables on remote
nodes (this is typically only necessary in rsh- or ssh-based environments --
batch/scheduled environments typically copy the current environment to the execution of
remote jobs, so if the current environment has PATH and/or LD_LIBRARY_PATH set properly,
the remote nodes will also have it set properly). If Open MPI was compiled with shared
library support, it may also be necessary to have the LD_LIBRARY_PATH environment variable
set on remote nodes as well (especially to find the shared libraries required to run user
MPI applications).
However, it is not always desirable or possible to edit shell startup files to set PATH
and/or LD_LIBRARY_PATH. The --prefix option is provided for some simple configurations
where this is not possible.
The --prefix option takes a single argument: the base directory on the remote node where
Open MPI is installed. Open MPI will use this directory to set the remote PATH and
LD_LIBRARY_PATH before executing any Open MPI or user applications. This allows running
Open MPI jobs without having pre-configured the PATH and LD_LIBRARY_PATH on the remote
nodes.
Open MPI adds the basename of the current node's "bindir" (the directory where Open MPI's
executables are installed) to the prefix and uses that to set the PATH on the remote node.
Similarly, Open MPI adds the basename of the current node's "libdir" (the directory where
Open MPI's libraries are installed) to the prefix and uses that to set the LD_LIBRARY_PATH
on the remote node. For example:
Local bindir: /local/node/directory/bin
Local libdir: /local/node/directory/lib64
If the following command line is used:
% mpirun --prefix /remote/node/directory
Open MPI will add "/remote/node/directory/bin" to the PATH and
"/remote/node/directory/lib64" to the LD_LIBRARY_PATH on the remote node before attempting
to execute anything.
The --prefix option is not sufficient if the installation paths on the remote node are
different than the local node (e.g., if "/lib" is used on the local node, but "/lib64" is
used on the remote node), or if the installation paths are something other than a
subdirectory under a common prefix.
Note that executing mpirun via an absolute pathname is equivalent to specifying --prefix
without the last subdirectory in the absolute pathname to mpirun. For example:
% /usr/local/bin/mpirun ...
is equivalent to
% mpirun --prefix /usr/local
Exported Environment Variables
All environment variables that are named in the form OMPI_* will automatically be exported
to new processes on the local and remote nodes. Environmental parameters can also be
set/forwarded to the new processes using the MCA parameter mca_base_env_list. The -x
option to mpirun has been deprecated, but the syntax of the MCA param follows that prior
example. While the syntax of the -x option and MCA param allows the definition of new
variables, note that the parser for these options are currently not very sophisticated -
it does not even understand quoted values. Users are advised to set variables in the
environment and use the option to export them; not to define them.
Setting MCA Parameters
The -mca switch allows the passing of parameters to various MCA (Modular Component
Architecture) modules. MCA modules have direct impact on MPI programs because they allow
tunable parameters to be set at run time (such as which BTL communication device driver to
use, what parameters to pass to that BTL, etc.).
The -mca switch takes two arguments: <key> and <value>. The <key> argument generally
specifies which MCA module will receive the value. For example, the <key> "btl" is used
to select which BTL to be used for transporting MPI messages. The <value> argument is the
value that is passed. For example:
mpirun -mca btl tcp,self -np 1 foo
Tells Open MPI to use the "tcp" and "self" BTLs, and to run a single copy of "foo" an
allocated node.
mpirun -mca btl self -np 1 foo
Tells Open MPI to use the "self" BTL, and to run a single copy of "foo" an allocated
node.
The -mca switch can be used multiple times to specify different <key> and/or <value>
arguments. If the same <key> is specified more than once, the <value>s are concatenated
with a comma (",") separating them.
Note that the -mca switch is simply a shortcut for setting environment variables. The
same effect may be accomplished by setting corresponding environment variables before
running mpirun. The form of the environment variables that Open MPI sets is:
OMPI_MCA_<key>=<value>
Thus, the -mca switch overrides any previously set environment variables. The -mca
settings similarly override MCA parameters set in the $OPAL_PREFIX/etc/openmpi-mca-
params.conf or $HOME/.openmpi/mca-params.conf file.
Unknown <key> arguments are still set as environment variable -- they are not checked (by
mpirun) for correctness. Illegal or incorrect <value> arguments may or may not be
reported -- it depends on the specific MCA module.
To find the available component types under the MCA architecture, or to find the available
parameters for a specific component, use the ompi_info command. See the ompi_info(1) man
page for detailed information on the command.
Setting MCA parameters and environment variables from file.
The -tune command line option and its synonym -mca mca_base_envar_file_prefix allows a
user to set mca parameters and environment variables with the syntax described below.
This option requires a single file or list of files separated by "," to follow.
A valid line in the file may contain zero or many "-x", "-mca", or “--mca” arguments. The
following patterns are supported: -mca var val -mca var "val" -x var=val -x var. If any
argument is duplicated in the file, the last value read will be used.
MCA parameters and environment specified on the command line have higher precedence than
variables specified in the file.
Running as root
The Open MPI team strongly advises against executing mpirun as the root user. MPI
applications should be run as regular (non-root) users.
Reflecting this advice, mpirun will refuse to run as root by default. To override this
default, you can add the --allow-run-as-root option to the mpirun command line, or you can
set the environmental parameters OMPI_ALLOW_RUN_AS_ROOT=1 and
OMPI_ALLOW_RUN_AS_ROOT_CONFIRM=1. Note that it takes setting two environment variables to
effect the same behavior as --allow-run-as-root in order to stress the Open MPI team's
strong advice against running as the root user. After extended discussions with
communities who use containers (where running as the root user is the default), there was
a persistent desire to be able to enable root execution of mpirun via an environmental
control (vs. the existing --allow-run-as-root command line parameter). The compromise of
using two environment variables was reached: it allows root execution via an environmental
control, but it conveys the Open MPI team's strong recomendation against this behavior.
Exit status
There is no standard definition for what mpirun should return as an exit status. After
considerable discussion, we settled on the following method for assigning the mpirun exit
status (note: in the following description, the "primary" job is the initial application
started by mpirun - all jobs that are spawned by that job are designated "secondary"
jobs):
• if all processes in the primary job normally terminate with exit status 0, we return 0
• if one or more processes in the primary job normally terminate with non-zero exit
status, we return the exit status of the process with the lowest MPI_COMM_WORLD rank to
have a non-zero status
• if all processes in the primary job normally terminate with exit status 0, and one or
more processes in a secondary job normally terminate with non-zero exit status, we (a)
return the exit status of the process with the lowest MPI_COMM_WORLD rank in the lowest
jobid to have a non-zero status, and (b) output a message summarizing the exit status of
the primary and all secondary jobs.
• if the cmd line option --report-child-jobs-separately is set, we will return -only- the
exit status of the primary job. Any non-zero exit status in secondary jobs will be
reported solely in a summary print statement.
By default, the job will abort when any process terminates with non-zero status. The MCA
parameter "orte_abort_on_non_zero_status" can be set to "false" (or "0") to cause OMPI to
not abort a job if one or more processes return a non-zero status. In that situation the
OMPI records and notes that processes exited with non-zero termination status to report
the approprate exit status of mpirun (per bullet points above).
EXAMPLES
Be sure also to see the examples throughout the sections above.
mpirun -np 4 -mca btl ib,tcp,self prog1
Run 4 copies of prog1 using the "ib", "tcp", and "self" BTL's for the transport of MPI
messages.
mpirun -np 4 -mca btl tcp,sm,self
--mca btl_tcp_if_include eth0 prog1
Run 4 copies of prog1 using the "tcp", "sm" and "self" BTLs for the transport of MPI
messages, with TCP using only the eth0 interface to communicate. Note that other BTLs
have similar if_include MCA parameters.
RETURN VALUE
mpirun returns 0 if all processes started by mpirun exit after calling MPI_FINALIZE. A
non-zero value is returned if an internal error occurred in mpirun, or one or more
processes exited before calling MPI_FINALIZE. If an internal error occurred in mpirun,
the corresponding error code is returned. In the event that one or more processes exit
before calling MPI_FINALIZE, the return value of the MPI_COMM_WORLD rank of the process
that mpirun first notices died before calling MPI_FINALIZE will be returned. Note that,
in general, this will be the first process that died but is not guaranteed to be so.
If the --timeout command line option is used and the timeout expires before the job
completes (thereby forcing mpirun to kill the job) mpirun will return an exit status
equivalent to the value of ETIMEDOUT (which is typically 110 on Linux and OS X systems).
SEE ALSO
MPI_Init_thread(3)