NAME

       patmatdb - Searches protein sequences with a sequence motif

SYNOPSIS

       patmatdb -sequence seqall -motif string -outfile report

       patmatdb -help

DESCRIPTION

       patmatdb is a command line program from EMBOSS (“the European Molecular Biology Open
       Software Suite”). It is part of the "Protein:Motifs" command group(s).

OPTIONS

   Input section
       -sequence seqall

   Required section
       -motif string
           Patterns for patmatdb are based on the format of pattern used in the PROSITE database.
           For example: '[DE](2)HS{P}X(2)PX(2,4)C' means two Asps or Glus in any order followed
           by His, Ser, any residue other then Pro, then two of any residue followed by Pro
           followed by two to four of any residue followed by Cys. The search is
           case-independent, so 'AAA' matches 'aaa'.

   Output section
       -outfile report

BUGS

       Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or
       directly to the EMBOSS developers
       (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

       patmatdb is fully documented via the tfm(1) system.

AUTHOR

       Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
           Wrote the script used to autogenerate this manual page.

COPYRIGHT

       This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package.
       It can be redistributed under the same terms as EMBOSS itself.