NAME

       pullseq - <short_description>

DESCRIPTION

       pullseq - a bioinformatics tool for manipulating fasta and fastq files

       Version:  1.0.2               Name  lookup  method:  UTHASH  (Written  by  bct - copyright
       2012-2015)

   Usage:
              pullseq -i <input fasta/fastq file> -n <header names to select>

              pullseq -i <input fasta/fastq file> -m <minimum sequence length>

              pullseq -i <input fasta/fastq file> -g <regex name to match>

              pullseq -i <input fasta/fastq file> -m <minimum sequence length> -a  <max  sequence
              length>

              pullseq -i <input fasta/fastq file> -t

              cat <names to select from STDIN> | pullseq -i <input fasta/fastq file> -N

              Options:

       -i, --input,
              Input fasta/fastq file (required)

       -n, --names,
              File of header id names to search for

       -N, --names_stdin, Use STDIN for header id names

       -g, --regex,
              Regular expression to match (PERL compatible; always case-insensitive)

       -m, --min,
              Minimum sequence length

       -a, --max,
              Maximum sequence length

       -l, --length,
              Sequence characters per line (default 50)

       -c, --convert,
              Convert input to fastq/fasta (e.g. if input is fastq, output will be fasta)

       -q, --quality,
              ASCII code to use for fasta->fastq quality conversions

       -e, --excluded,
              Exclude the header id names in the list (-n)

       -t, --count,
              Just count the possible output, but don't write it

       -h, --help,
              Display this help and exit

       -v, --verbose,
              Print extra details during the run

       --version,
              Output version information and exit

AUTHOR

        This manpage was written by Nilesh Patra for the Debian distribution and
        can be used for any other usage of the program.