NAME

       pxrecode - nucleotide sequence recoding

SYNOPSIS

       pxrecode [OPTIONS]...

DESCRIPTION

       Nucleotide sequence recoding.  This will take fasta, fastq, phylip, and nexus formats from
       a file or STDIN.

OPTIONS

       -s, --seqf=FILE
              input sequence file, STDIN otherwise

       -r, --recode=STRING
              string identifying recoding scheme (default: RY)

              Supported recodings (use any valid combination):

              R = A|G Y = C|T S = C|G W = A|T M = A|C K = G|T B = C|G|T D = A|G|T H = A|C|T  V  =
              A|C|G

       -o, --outf=FILE
              output sequence file, STOUT otherwise

       -h, --help
              display this help and exit

       -V, --version
              display version and exit

       -C, --citation
              display phyx citation and exit

CITATION

       Brown,  Joseph  W., Joseph F. Walker, and Stephen A. Smith. 2017. Phyx: phylogenetic tools
       for unix. Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.

AUTHOR

       Written by Joseph W. Brown

REPORTING BUGS

       Report   bugs   to:   <https://github.com/FePhyFoFum/phyx/issues>    phyx    home    page:
       <https://github.com/FePhyFoFum/phyx>

COPYRIGHT

       Copyright © 2013-2021 FePhyFoFum License GPLv3