NAME

       pxrevcomp - reverse complement sequences

SYNOPSIS

       pxrevcomp [OPTIONS]... [FILE]...

DESCRIPTION

       Reverse complement sequences.  This will take fasta, fastq, phylip, and nexus formats from
       a file or STDIN.  Results are written in fasta format.

OPTIONS

       -s, --seqf=FILE
              input sequence file, STDIN otherwise

       -i, --ids=IDS
              a comma sep list of ids to flip (NO SPACES!)

       -g, --guess
              EXPERIMENTAL: guess whether there are seqs that need to be  rev  comp.  uses  edlib
              library on first seq

       -p, --pguess
              EXPERIMENTAL: progressively guess

       -m, --sguess
              EXPERIMENTAL: sampled guess

       -o, --outf=FILE
              output sequence file, STOUT otherwise

       -h, --help
              display this help and exit

       -V, --version
              display version and exit

       -C, --citation
              display phyx citation and exit

CITATION

       Brown,  Joseph  W., Joseph F. Walker, and Stephen A. Smith. 2017. Phyx: phylogenetic tools
       for unix. Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.

AUTHOR

       Written by Stephen A. Smith (blackrim)

REPORTING BUGS

       Report   bugs   to:   <https://github.com/FePhyFoFum/phyx/issues>    phyx    home    page:
       <https://github.com/FePhyFoFum/phyx>

COPYRIGHT

       Copyright © 2017-2021 FePhyFoFum License GPLv3