NAME

       Raptor  -  A  fast  and  space-efficient pre-filter for querying very large collections of
       nucleotide sequences.

DESCRIPTION

       Raptor is a system for  approximately  searching  many  queries  such  as  next-generation
       sequencing  reads or transcripts in large collections of nucleotide sequences. Raptor uses
       winnowing minimizers to define a  set  of  representative  k-mers,  an  extension  of  the
       interleaved  Bloom  filters  (IBFs)  as  a set membership data structure and probabilistic
       thresholding for minimizers. Our approach allows compression and partitioning of  the  IBF
       to enable the effective use of secondary memory.

SUBCOMMANDS

       This program must be invoked with one of the following subcommands:
       - build
       - layout
       - prepare
       - search
       - upgrade

       See the respective help page for further details (e.g. by calling Raptor build -h).

       The following options below belong to the top-level parser and need to be specified before
       the subcommand key word. Every argument after the subcommand key word is passed on to  the
       corresponding sub-parser.

OPTIONS

   Common options
       -h, --help
              Prints the help page.

       -hh, --advanced-help
              Prints the help page including advanced options.

       --version
              Prints the version information.

       --copyright
              Prints the copyright/license information.

       --export-help (std::string)
              Export the help page information. Value must be one of [html, man, ctd, cwl].

VERSION

       Last update: Unavailable
       Raptor version: 3.0.1 (commit unavailable)
       Sharg version: 1.1.1
       SeqAn version: 3.3.0-rc.2

URL

       https://github.com/seqan/raptor

LEGAL

       Raptor Copyright: BSD 3-Clause License
       Author: Enrico Seiler
       Contact: enrico.seiler@fu-berlin.de
       SeqAn Copyright: 2006-2023 Knut Reinert, FU-Berlin; released under the 3-clause BSDL.
       In  your  academic  works  please  cite: Raptor: A fast and space-efficient pre-filter for
       querying very large collections of nucleotide sequences; Enrico Seiler, Svenja  Mehringer,
       Mitra  Darvish,  Etienne  Turc,  and  Knut  Reinert;  iScience  2021  24 (7): 102782. doi:
       https://doi.org/10.1016/j.isci.2021.102782
       For full copyright and/or warranty information see --copyright.