NAME

       rnr-tii - computes the taxonomic instability index

DESCRIPTION

       This is RnR-tii version 1.0 released by Andre J. Aberer in 2011-10-25.

       This program computes the taxonomic instability index.

       SYNTAX: rnr-tii -i <bootTrees> -n <runId> [-w <workingDir>] [-h] [-x <excludeFile>]

       OBLIGATORY: -i <bootTrees>

              A collection of bootstrap trees.

       -n <runId>

              An identifier for this run.

       OPTIONAL -z <z>

              The  exponent  used  in  the  TII  formula.  Use  small  values  to emphasize close
              relationships and vice versa. DEFAULT: 2

       -w <workDir>

              A working directory where output files are created.

       -x <excludeFile>

              Exclude the taxa in this file (one taxon per line) prior to computing the TII.

       -h

              This help file.

AUTHOR

       This manpage was written by Nilesh Patra for the Debian distribution and can be  used  for
       any other usage of the program.