NAME

       scrappie - basecaller for Nanopore sequencer

DESCRIPTION

       Scrappie  is  a  technology  demonstrator  for  the  Oxford  Nanopore Technologies Limited
       Research Algorithms group.

       Basic usage: * scrappie events        Base call from event based data.   *  scrappie  help
       Print  general  help  or  help  about  specific  Scrappie  command.   *  scrappie  licence
       Print licensing information.  * scrappie raw           Base call directly from raw signal.
       *  scrappie  version        Print  version  information.   * scrappie squiggle      Create
       approximate squiggle for sequence *  scrappie  mappy          Map  signal  to  approximate
       squiggle  *  scrappie  seqmappy       Map  signal  to  sequence  via basecall posteriors *
       scrappie event_table   Output table of events for read

       This project began life as a proof (bet) that a base caller could  be  written  in  a  low
       level  language  in  under 8 hours.  Some of the poor and just plain odd design decisions,
       along with the lack of documentation, are a result of its inception. In keeping with ONT's
       fish naming policy, the project was originally called Crappie.

       Scrappie's purpose is to demonstrate the next generation of base calling and, as such, may
       change drastically between releases and breaks backwards  compatibility.   Newer  versions
       may drop support of current features or change their behaviour.

AUTHOR

        This manpage was written by Nilesh Patra for the Debian distribution and
        can be used for any other usage of the program.