NAME

       wgsim - short read simulator

SYNOPSIS

       wgsim [options] <in.ref.fa> <out.read1.fq> <out.read2.fq>

OPTIONS

       -e FLOAT
              base error rate [0.020]

       -d INT outer distance between the two ends [500]

       -s INT standard deviation [50]

       -N INT number of read pairs [1000000]

       -1 INT length of the first read [70]

       -2 INT length of the second read [70]

       -r FLOAT
              rate of mutations [0.0010]

       -R FLOAT
              fraction of indels [0.15]

       -X FLOAT
              probability an indel is extended [0.30]

       -S INT seed for random generator [-1]

       -h     haplotype mode

AUTHOR

       The software was written by Heng Li <lh3@sanger.ac.uk>

       This  manpage was written by Andreas Tille for the Debian distribution and can be used for
       any other usage of the program.