NAME

       Bio::DB::GFF::Aggregator::match -- Match aggregator

SYNOPSIS

         use Bio::DB::GFF;

         # Open the sequence database
         my $db      = Bio::DB::GFF->new( -adaptor => 'dbi:mysql',
                                          -dsn     => 'dbi:mysql:elegans42',
                                          -aggregator => ['match'],
                                        );

        -------------------------------------------------
        Aggregator method: match
        Main method:       match
        Sub methods:       similarity HSP
        -------------------------------------------------

DESCRIPTION

       This aggregator is used for Sequence Ontology-compatible gapped alignments, in which there is a single
       top-level alignment called "match" and a series of subalignments called either "similarity" or "HSP".

       Also see the "alignment" aggregator.

   method
        Title   : method
        Usage   : $aggregator->method
        Function: return the method for the composite object
        Returns : the string "match"
        Args    : none
        Status  : Public

   part_names
        Title   : part_names
        Usage   : $aggregator->part_names
        Function: return the methods for the sub-parts
        Returns : the list "similarity", "HSP"
        Args    : none
        Status  : Public

   main_name
        Title   : main_name
        Usage   : $aggregator->main_name
        Function: return the method for the main component
        Returns : the string "match"
        Args    : none
        Status  : Public

BUGS

       None reported.

SEE ALSO

       Bio::DB::GFF, Bio::DB::GFF::Aggregator

AUTHOR

       Lincoln Stein <lstein@cshl.org>.

       Copyright (c) 2001 Cold Spring Harbor Laboratory.

       This library is free software; you can redistribute it and/or modify it under the same terms as Perl
       itself.

perl v5.30.0                                       2020-01-13               Bio::DB::GFF::Aggregator::match(3pm)