NAME

       Bio::Graphics::Browser2::PluginSet -- A set of plugins

SYNOPSIS

       None.  Used internally by gbrowse & gbrowse_img.

METHODS

       $plugin_set = Bio::Graphics::Browser2::PluginSet->new($config,$state,@search_path)
           Initialize plugins according to the configuration, page settings and the plugin search path.  Returns
           an object.

       $plugin_set->configure($database)
           Configure the plugins given the database.

       $plugin_set->annotate($segment,$feature_files,$rel2abs)
           Run  plugin  annotations  on  the  $segment,  adding  the  resulting feature files to the hash ref in
           $feature_files ({track_name=>$feature_list}).   The  $rel2abs  argument  holds  a  coordinate  mapper
           callback, but is currently unused.

SEE ALSO

       Bio::Graphics::Browser

AUTHOR

       Lincoln Stein <lstein@cshl.org>.

       Copyright (c) 2005 Cold Spring Harbor Laboratory

       This  package  and  its accompanying libraries is free software; you can redistribute it and/or modify it
       under the terms of the GPL (either version 1, or at your option,  any  later  version)  or  the  Artistic
       License  2.0.   Refer  to  LICENSE  for the full license text. In addition, please see DISCLAIMER.txt for
       disclaimers of warranty.

perl v5.38.2                                       2024-03-31             Bio::Graphics::...ser2::RemoteSet(3pm)