NAME

       Bio::Tools::Seg - parse "seg" output

SYNOPSIS

         use Bio::Tools::Seg;
         my $parser = Bio::Tools::Seg->(-file => 'seg.fasta');
         while ( my $f = $parser->next_result ) {
           if ($f->score < 1.5) {
             print $f->location->to_FTstring, " is low complexity\n";
           }
         }

DESCRIPTION

       "seg" identifies low-complexity regions on a protein sequence.  It is usually part of the "WU-BLAST" and
       "InterProScan" packages.

       The Bio::Tools::Seg module will only parse the "fasta" output modes of "seg", i.e. "seg -l" (low
       complexity regions only), "seg -h" (high complexity regions only), or "seg -a" (both low and high).

       It creates a Bio::SeqFeature::Generic for each FASTA-like entry found in the input file. It is up to the
       user to appropriately filter these using the feature's score.

FEEDBACK

   Mailing Lists
       User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments
       and suggestions preferably to the Bioperl mailing list.  Your participation is much appreciated.

         bioperl-l@bioperl.org                  - General discussion
         http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and reponsive experts will be able look
       at the problem and quickly address it. Please include a thorough description of the problem with code and
       data examples if at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution.
       Bug reports can be submitted via the web:

         https://github.com/bioperl/bioperl-live/issues

AUTHOR - Torsten Seemann

       Email - torsten.seemann AT infotech.monash.edu.au

CONTRIBUTOR - Bala

       Email - savikalpa@fugu-sg.org

APPENDIX

       The rest of the documentation details each of the object methods.  Internal methods are usually preceded
       with a _

   new
        Title   : new
        Usage   : my $obj = Bio::Tools::Seg->new();
        Function: Builds a new Bio::Tools::Seg object
        Returns : Bio::Tools::Seg
        Args    : -fh/-file => $val, # for initing input, see Bio::Root::IO

   next_result
        Title   : next_result
        Usage   : my $feat = $seg->next_result
        Function: Get the next result set from parser data
        Returns : Bio::SeqFeature::Generic
        Args    : none

perl v5.32.1                                       2021-08-15                               Bio::Tools::Seg(3pm)