NAME

       VFDB_cdhit_to_csv - Parse cdhit results

SYNOPSIS

       VFDB_cdhit_to_csv [-h] --cluster_file CLUSTER_FILE --infile INFILE --outfile OUTFILE

DESCRIPTION

       This tool is part of the SRST2 suite.

       Output  a  comma-separated  table  of  alleles,  their inferred gene name (from annotation) and their 90%
       cluster from CD-HIT analysis

OPTIONS

   optional arguments:
       -h, --help
              show this help message and exit

       --cluster_file CLUSTER_FILE
              cd hit output file (.clstr)

       --infile INFILE
              raw sequences file that was input to cdhit (fasta)

       --outfile OUTFILE
              output file (csv)

AUTHOR

       This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage
       of the program.

VFDB_cdhit_to_csv 0.1.8                             June 2016                               VFDB_CDHIT_TO_CSV(1)