NAME

       cnvkit_metrics - Compute coverage deviations and other metrics for self-evaluation.

DESCRIPTION

       usage: cnvkit.py metrics [-h] [-s SEGMENTS [SEGMENTS ...]]

       [--drop-low-coverage] [-o FILENAME]
              cnarrays [cnarrays ...]

   positional arguments:
       cnarrays
              One or more bin-level coverage data files (*.cnn, *.cnr).

   options:
       -h, --help
              show this help message and exit

       -s SEGMENTS [SEGMENTS ...], --segments SEGMENTS [SEGMENTS ...]
              One  or  more  segmentation  data files (*.cns, output of the 'segment' command). If more than one
              file is given, the number must match the coverage data files, in which case the input  files  will
              be  paired together in the given order. Otherwise, the same segments will be used for all coverage
              files.

       --drop-low-coverage
              Drop very-low-coverage bins before calculations to reduce negative "fat tail" of bin  log2  values
              in poorquality tumor samples.

       -o FILENAME, --output FILENAME
              Output table file name.

cnvkit.py metrics 0.9.10                            July 2023                                  CNVKIT_METRICS(1)