NAME

       lefse_plot_res.py - determine features of organisms, clades, taxonomic units, genes

DESCRIPTION

       usage: lefse_plot_res.py [-h] [--feature_font_size FEATURE_FONT_SIZE]

       [--format {png,svg,pdf}] [--dpi DPI] [--title TITLE]
              [--title_font_size  TITLE_FONT_SIZE]  [--class_legend_font_size  CLASS_LEGEND_FONT_SIZE]  [--width
              WIDTH] [--height HEIGHT] [--left_space LS] [--right_space RS] [--orientation  {h,v}]  [--autoscale
              {0,1}]   [--background_color   {k,w}]   [--subclades  N_SCL]  [--max_feature_len  MAX_FEATURE_LEN]
              [--all_feats ALL_FEATS] [--otu_only] [--report_features] INPUT_FILE OUTPUT_FILE

       Plot results

   positional arguments:
       INPUT_FILE
              tab delimited input file

       OUTPUT_FILE
              the file for the output image

   optional arguments:
       -h, --help
              show this help message and exit

       --feature_font_size FEATURE_FONT_SIZE
              the file for the output image

       --format {png,svg,pdf}
              the format for the output file

       --dpi DPI

       --title TITLE

       --title_font_size TITLE_FONT_SIZE

       --class_legend_font_size CLASS_LEGEND_FONT_SIZE

       --width WIDTH

       --height HEIGHT
              only for vertical histograms

       --left_space LS

       --right_space RS

       --orientation {h,v}

       --autoscale {0,1}

       --background_color {k,w}
              set the color of the background

       --subclades N_SCL
              number of label levels to be dislayed (starting from the leaves, -1 means all  the  levels,  1  is
              default )

       --max_feature_len MAX_FEATURE_LEN
              Maximum length of feature strings (def 60)

       --all_feats ALL_FEATS

       --otu_only
              Plot only species resolved OTUs (as opposed to all levels)

       --report_features
              Report important features to STDOUT

AUTHOR

       This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage
       of the program.

lefse_plot_res.py 1.1.2                          September 2021                             LEFSE_PLOT_RES.PY(1)