Provided by: phyx_1.3.1+ds-2build1_amd64 bug

NAME
       pxvcf2fa - convert vcf file to fasta


SYNOPSIS
       pxvcf2fa [OPTIONS]...


DESCRIPTION
       Convert vcf file to fasta.  Currently only handles haploid data; phased data will come soon.  Data can be
       read from a file or STDIN.


OPTIONS
       -s, --seqf=FILE
              input vcf file, STDIN otherwise

       -u, --uppercase
              export characters in uppercase

       -o, --outf=FILE
              output fasta sequence file, STOUT otherwise

       -h, --help
              display this help and exit

       -V, --version
              display version and exit

       -C, --citation
              display phyx citation and exit


CITATION
       Brown,  Joseph  W.,  Joseph  F.  Walker,  and  Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix.
       Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.


AUTHOR
       Written by Joseph W. Brown


REPORTING BUGS
       Report      bugs      to:      <https://github.com/FePhyFoFum/phyx/issues>      phyx      home      page:
       <https://github.com/FePhyFoFum/phyx>


COPYRIGHT
       Copyright © 2013-2021 FePhyFoFum License GPLv3

pxvcf2fa 1.3                                        July 2023                                        PXVCF2FA(1)