NAME

       pybel - Command line interface for PyBEL

SYNOPSIS

       pybel [OPTIONS] COMMAND [ARGS]...

DESCRIPTION

        PyBEL is a pure Python package for parsing and handling biological
        networks encoded in the Biological Expression Language (BEL) version
        2. It also facilitates data interchange between common formats and
        databases such as NetworkX, JSON, CSV, SIF, Cytoscape, CX, NDEx, SQL,
        and Neo4J.

OPTIONS

       --version
              Show the version and exit.

       -c, --connection TEXT
              Database connection string.  [default: sqlite:////home/andreas/.pybel/pybel_0.14.0_cache.db]

       --help Show this message and exit.

   Commands:
       compile
              Compile a BEL script to a graph.

       insert Insert a graph to the database.

       machine
              Get content from the INDRA machine and upload to BEL Commons.

       manage Manage the database.

       neo    Upload to neo4j.

       post   Upload a graph to BEL Commons.

       serialize
              Serialize a graph to various formats.

       summarize
              Summarize a graph.

       warnings
              List warnings from a graph.

AUTHOR

        This manpage was written by Andreas Tille for the Debian distribution and
        can be used for any other usage of the program.

pybel 0.14.5                                       March 2020                                           PYBEL(1)