NAME

       Bio::DB::Sam::Constants -- Constants for use with SAM/BAM

SYNOPSIS

        use Bio::DB::Sam::Constants;
        my $pad_flag = BAM_CPAD;

DESCRIPTION

       This module exports several constants for use with the SAM/BAM module. See the SAM documentation for
       their interpretation.

       Cigar operations
             BAM_CIGAR_SHIFT
             BAM_CIGAR_MASK
             BAM_CMATCH
             BAM_CINS
             BAM_CDEL
             BAM_CREF_SKIP
             BAM_CSOFT_CLIP
             BAM_CHARD_CLIP
             BAM_CPAD

       FLAGS
           A hashref that maps flag values to human-readable names. For example:

            FLAGS->{0x0008} == 'M_UNMAPPED'

       RFLAGS
           The reverse of FLAGS:

            FLAGS->{M_UNMAPPED} == 0x0008

SEE ALSO

       Bio::Perl, Bio::DB::Sam, Bio::DB::Bam::Alignment

AUTHOR

       Lincoln Stein <lincoln.stein@oicr.on.ca>.  <lincoln.stein@bmail.com>

       Copyright (c) 2009-2015 Ontario Institute for Cancer Research.

       This  package  and its accompanying libraries are free software; you can redistribute it and/or modify it
       under the terms of the Artistic License 2.0, the Apache 2.0 License, or the GNU  General  Public  License
       (version 1 or higher).  Refer to LICENSE for the full license text.

perl v5.38.2                                       2024-03-12                       Bio::DB::Sam::Constants(3pm)