NAME

       gthsplit - split GenomeThreader output files

SYNOPSIS

       gthsplit  -alignmentscore | -coverage [option ...] [file ...]

DESCRIPTION

       Split GenomeThreader output files containing intermediate results.

OPTIONS

       -alignmentscore
           split according to the overall alignment score (scr) default: no

       -coverage
           split according to coverage (cov) default: no

       -range
           set the percentage range used to create the sets default: 5

       -minalignmentscore
           set the minimum alignment score for spliced alignments to be included into the set of
           spliced alignments default: 0.00

       -maxalignmentscore
           set the maximum alignment score for spliced alignments to be included into the set of
           spliced alignments default: 1.00

       -mincoverage
           set the minimum coverage for spliced alignments to be included into the set of spliced
           alignments default: 0.00

       -maxcoverage
           set the maximum coverage for spliced alignments to be included into the set of spliced
           alignments default: 9999.99

       -v
           be verbose default: no

       -gzip
           write gzip compressed output file(s) default: no

       -bzip2
           write bzip2 compressed output file(s) default: no

       -force
           force writing to split files default: no

       -help
           display help and exit

       -version
           display version information and exit

                                                                                      GTHSPLIT(1)