NAME

       pique-run - software pipeline for performing genome wide association studies

SYNOPSIS

       pique-run -i in_prefix [-n threads] [-o out_prefix] [-k kinship] [-c cov_file] -t transform

OPTIONS

   Mandatory parameters:
       -i in_prefix: input prefix for .tped .tfam and .pheno files

   Optional parameters:
       -n threads: number of threads. Defaults to 1

       -o out_prefix: prefix for output files. Defaults to [input_prefix]

       -k kinship: method used to calculate kinship matrix. Either 'IBS' (default) or 'BN' methods

       -c cov_file: covariate file name

       -t transform: phenotype transformation (BC = Box-Cox, default = none)

       More information about pique-run usage can be found in the PIQUE documentation

AUTHOR

       Tony Travis <tony.travis@abdn.ac.uk> and Alex Douglas <a.douglas@abdn.ac.uk

       This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage
       of the program.