NAME

       bamindex - create index for BAM file

SYNOPSIS

       bamindex [options]

DESCRIPTION

       bamindex  reads  a  BAM  file from standard input and produces a BAM index (.bai) file for
       this BAM file on standard output.

       verbose=<1>: Valid values are

       1:     print progress report on standard error

       0:     do not print progress report

       tmpfile=<filename>: set the prefix for temporary file names.  By default  temporary  files
       are created in the current directory.

AUTHOR

       Written by German Tischler.

REPORTING BUGS

       Report bugs to <germant@miltenyibiotec.de>

COPYRIGHT

       Copyright  ©  2009-2013  German  Tischler,  ©  2011-2013 Genome Research Limited.  License
       GPLv3+: GNU GPL version 3 <http://gnu.org/licenses/gpl.html>
       This is free software: you are free to change and redistribute it.  There is NO  WARRANTY,
       to the extent permitted by law.