NAME

       cluster3 — Eisen-clustering of microarray data

SYNOPSIS

       cluster3 [-f filename]  [-l 0|1]  [-u jobname]  [-g [0..9]]  [-e [0..9]]  [-m [msca]]  [-k
       number]  [-s 0|1]  [-x number]  [-y number]

OPTIONS

       -h--help  Show summary of options.

       -f filename
                 file loding

       -u jobname
                 Allows you to specify a different name for the output files (default is  derived
                 from the input file name)

       -l 0|1    Specifies whether to log-transform the data (default is 0, no log-transform)

       -k number Specifies  whether to run k-means clustering instead of hierarchical clustering,
                 and the number of clusters k to use (default: 0)

       -x number Specifies the horizontal dimension of the SOM grid (default: 2)

       -y number Specifies the vertical dimension of the SOM grid (default: 1)

       -s 0|1    Specifies whether  to  calculate  an  SOM  instead  of  hierarchical  clustering
                 (default: 0)

       -v           --version
                 Show version of program.

       -g  [0..9]     Specifies the distance measure for gene clustering 0: No gene clustering 1:
       Uncentered correlation 2: Pearson correlation 3: Uncentered correlation, absolute value 4:
       Pearson  correlation,  absolute  value  5: Spearman's rank correlation 6: Kendall's tau 7:
       Euclidean distance 8:  Harmonically  summed  Euclidean  distance  9:  City-block  distance
       (default: 1)

       -e [0..9]     Specifies the distance measure for microarray clustering 0: No clustering 1:
       Uncentered correlation 2: Pearson correlation 3: Uncentered correlation, absolute value 4:
       Pearson  correlation,  absolute  value  5: Spearman's rank correlation 6: Kendall's tau 7:
       Euclidean distance 8:  Harmonically  summed  Euclidean  distance  9:  City-block  distance
       (default: 0)

       -m  [msca]     Specifies which hierarchical clustering method to use m: Pairwise complete-
       linkage s: Pairwise single-linkage  c:  Pairwise  centroid-linkage  a:  Pairwise  average-
       linkage (default: m)

SEE ALSO

       mapletree (1), smile (1).

AUTHOR

       This  manual page was written by Steffen Moeller moeller@pzr.uni-rostock.de for the Debian
       system (but may be used by others).  Permission is  granted  to  copy,  distribute  and/or
       modify  this  document  under  the  terms of the GNU General Public License, Version 2 any
       later version published by the Free Software Foundation.

       On Debian systems, the complete text of the GNU General Public License  can  be  found  in
       /usr/share/common-licenses/GPL.

                                                                                      CLUSTER3(1)