NAME

       fibxform - Apply coordinate transformations to point coordinates in .fib file.

SYNOPSIS

       fibxform XformList

DESCRIPTION

       A  file with fiber tracking results from the UNC Fiber Tracking tool is read from Standard
       Input and one or more (concatenated) coordinate transformations are applied to  all  fiber
       point  coordinates.  The  result  is  written  to Standard Output, again in UNC fiber file
       format.

OPTIONS

   Global Toolkit Options (these are shared by all CMTK tools)
       --help
            Write list of basic command line options to standard output.

       --help-all
            Write complete list of basic and advanced command line options to standard output.

       --wiki
            Write list of command line options to standard output in MediaWiki markup.

       --man
            Write man page source in 'nroff' markup to standard output.

       --version
            Write toolkit version to standard output.

       --echo
            Write the current command line to standard output.

       --verbose-level <integer>
            Set verbosity level.

       --verbose, -v
            Increment verbosity level by 1 (deprecated; supported for backward compatibility).

       --threads <integer>
            Set maximum number of parallel threads (for POSIX threads and OpenMP).

   Main Options
       --inversion-tolerance <double>
            Numerical tolerance of B-spline inversion in mm. Smaller values  will  lead  to  more
            accurate inversion, but may increase failure rate.  [Default: 0.001]

       --source-image <image-path>
            Set  source  image  of the transformation (i.e., an image defining the space in which
            fiber  tracking  was  performed)  to  correct  for  differences  in  orientation  and
            coordinate space.  [Default: NONE]

       --target-image <image-path>
            Set  target  image of the transformation (i.e., the image that the fiber track points
            are mapped into) to correct for differences  in  orientation  and  coordinate  space.
            [Default: NONE]

AUTHORS

       Torsten  Rohlfing,  with  contributions  from  Michael  P. Hasak, Greg Jefferis, Calvin R.
       Maurer, Daniel B. Russakoff, and Yaroslav Halchenko

LICENSE

       http://www.fsf.org/licensing/licenses/gpl.html

BUGS

       Report bugs at http://nitrc.org/projects/cmtk/

ACKNOWLEDGMENTS

       CMTK is developed with support from the NIAAA under Grant AA021697, National Consortium on
       Alcohol  and  Neurodevelopment  in Adolescence (N-CANDA): Data Integration Component. From
       April 2009 through September 2011, CMTK development and maintenance was supported  by  the
       NIBIB under Grant EB008381.