NAME

       cnvkit_breaks - List the targeted genes in which a copy number breakpoint occurs.

DESCRIPTION

       usage: cnvkit.py breaks [-h] [-m MIN_PROBES] [-o FILENAME] filename segment

   positional arguments:
       filename
              Processed sample coverage data file (*.cnr), the output of the 'fix' sub-command.

       segment
              Segmentation calls (.cns), the output of the 'segment' command).

   options:
       -h, --help
              show this help message and exit

       -m MIN_PROBES, --min-probes MIN_PROBES
              Minimum  number  of  within-gene probes on both sides of a breakpoint to report it.
              [Default: 1]

       -o FILENAME, --output FILENAME
              Output table file name.