NAME

       ecogrep  -  filtering  ecoPCR  result  based on taxonomic id filter and regular expression
       pattern

SYNOPSIS

       ecogrep [options] filename

DESCRIPTION

       ecoPCR is an electronic PCR software developed by LECA  and  Helix-Project.  It  helps  to
       estimate Barcode primers quality.

       This program belongs to the exoPCR package.

OPTIONS

       -1    : [FIRST] : compare the given pattern with direct strand oligonucleotide

       -2     : [SECOND] : compare the given pattern with reverse strand oligonucleotide

       -d     : [D]atabase containing taxonomic information

       -e     :  [E]rrors  :  max  error  allowed  in  pattern  match (option-1, -2 and -p) (0 by
              default)

       -p     : [P]attern : oligonucleotide pattern

       -h     : [H]elp : print <this> help

       -i     : [I]gnore subtree under given taxonomic id

       -r     : [R]estrict search to subtree under given taxomic id

       -v     : in[V]ert the sense of matching, to select non-matching lines.

       argument:
              ecoPCR output file name

SEE ALSO

       http://www.grenoble.prabi.fr/trac/ecoPCR/