NAME

       emmax: - emmax

SYNOPSIS

       emmax [options]

DESCRIPTION

       Required parameters

       -t [tpedf_prefix] : prefix for tped/tfam files

       -o [out_prefix]
              : output file name prefix

       Likely essential parameters

       -p  [phenof]  :  3-column phenotype file with FAMID, INDID at the first two colmns, in the
              same order of .tfam file. Not required only with -K option      -k [kinf] : n  *  n
              matrix containing kinship values in the individual order consistent to [tpedf].tfam
              file. [tpedf].kinf will be used if not specified

       -c [covf] : multi-column covariate file with FAMID, INDID at the first two colmns, in  the
              same order of .tfam fileOptional parameters

       -i [in_prefix] : input file name prefix including eigenvectors

       -d [# digits]
              : precision of the output values (default : 5)

       -s [start index of SNP] : start index of SNP (default : 0)

       -e [end index of SNP] : end index of SNP (default : #snps)

       -w : flag for writing eigenvalues/eigenvector files

       -D [delimiters] : delimter string in quotation marks

       -P [# heaer cols in tped] : # of column headers in tped file

       -F [# heaer cols in tfam] : # of column headers in tfam file

       Error : Unknown option character ?Usage: emmax [options] Required parameters

       -t [tpedf_prefix] : prefix for tped/tfam files

       -o [out_prefix]
              : output file name prefix

       Likely essential parameters

       -p  [phenof]  :  3-column phenotype file with FAMID, INDID at the first two colmns, in the
              same order of .tfam file. Not required only with -K option      -k [kinf] : n  *  n
              matrix containing kinship values in the individual order consistent to [tpedf].tfam
              file. [tpedf].kinf will be used if not specified

       -c [covf] : multi-column covariate file with FAMID, INDID at the first two colmns, in  the
              same order of .tfam fileOptional parameters

       -i [in_prefix] : input file name prefix including eigenvectors

       -d [# digits]
              : precision of the output values (default : 5)

       -s [start index of SNP] : start index of SNP (default : 0)

       -e [end index of SNP] : end index of SNP (default : #snps)

       -w : flag for writing eigenvalues/eigenvector files

       -D [delimiters] : delimter string in quotation marks

       -P [# heaer cols in tped] : # of column headers in tped file

       -F [# heaer cols in tfam] : # of column headers in tfam file