NAME

       fastaq_to_fasta - Converts a variety of input formats to nicely formatted FASTA format

DESCRIPTION

       usage: fastaq_to_fasta [options] <infile> <outfile>

       Converts a variety of input formats to nicely formatted FASTA format

   positional arguments:
       infile Name of input file. Can be any of FASTA, FASTQ, GFF3, EMBL, GBK, Phylip

       outfile
              Name of output file

   options:
       -h, --help
              show this help message and exit

       -l LINE_LENGTH, --line_length LINE_LENGTH
              Number  of  bases  on  each  sequence  line  of  output  file.   Set to zero for no
              linebreaks in sequences [60]

       -s, --strip_after_whitespace
              Remove everything after first whitespace in every sequence name

       -u, --check_unique
              Die if any of the output sequence names are not unique