NAME

       gt-compreads-refdecompress - Decodes a given RCR (Reference Compressed Reads).

SYNOPSIS

       gt compreads refdecompress [option ...] (-file file)

DESCRIPTION

       -v [yes|no]
           be verbose (default: no)

       -qnames [yes|no]
           decode read names, default is to just number them (default: no)

       -ref [string]
           Index file (generated by the gt encseq tool) for reference genome. (default:
           undefined)

       -rcr [string]
           specify base name of file containing RCR. (default: undefined)

       -name [string]
           specify base name for decoded RCR (suffix will be ".rcr.decoded") (default: undefined)

       -help
           display help and exit

       -version
           display version information and exit

REPORTING BUGS

       Report bugs to https://github.com/genometools/genometools/issues.