NAME

       gt-encseq-decode - Decode/extract encoded sequences.

SYNOPSIS

       gt encseq decode (sequence_file|indexname)

DESCRIPTION

       -mirrored [yes|no]
           virtually append the reverse complement of each sequence (default: no)

       -lossless [yes|no]
           allow lossless original sequence retrieval (default: no)

       -dir [string]
           specify reading direction (fwd, cpl, rev, rcl) (default: fwd)

       -singlechars [yes|no]
           do not use a GtEncseqReader but access each sequence character separately (default:
           no)

       -seq [value]
           extract sequence identified by its number (default: undefined)

       -seqrange [start end]
           extract multiple consecutive sequences (default: undefined)

       -output [...]
           specify output format (choose from fasta|concat) (default: fasta)

       -range [start end]
           concatenated range to extract (implies -output concat) (default: undefined)

       -sepchar [string]
           specify character to print as GT_SEPARATOR (default: |)

       -help
           display help for basic options and exit

       -help+
           display help for all options and exit

       -version
           display version information and exit

REPORTING BUGS

       Report bugs to https://github.com/genometools/genometools/issues.