NAME

       hinge - assembler for long-read sequencing data

SYNOPSIS

       hinge {subcommand} options files

OPTIONS

       Subcommands  are  described  below.   Run  each  subcommand  without  arguments  for usage
       information.

       filter filter out short reads and long chimeric reads.

       maximal
              get maximal reads.

       layout generate a layout for assembly

       clip   prune and clip output of the layout command

       draft-path
              get assembly graph as list of nodes

       draft  construct draft assembly

       correct-head
              convert fasta file to daligner-specific format

       consensus
              construct consensus sequence

       gfa    Create a graphical fragment assembly file from consensus output

       visualize, visualise

                                           October 2016                                  HINGE(1)