NAME

       ktGetTaxInfo - explore hierarchical metagenomic data with zoomable pie charts

DESCRIPTION

       Description:

              Retrieves  taxonomy information for accessions or taxonomy IDs (as arguments or the
              first field of <stdin>, separated by whitespace). If the input is a number,  it  is
              assumed  to  be  a  taxonomy  ID;  otherwise  it will be considered an accession or
              sequence ID containing an accession in the fourth  field  of  pipe  notation  (e.g.
              "gi|12345|xx|ABC123.1|",  ignoring  fasta/fastq  tag  markers  [>,@]).  If taxonomy
              information was not found for a given input line, the output line will be only  the
              taxonomy ID, which will be 0 if it was looked up from an accession but not found.

              Output fields are: taxID  depth  parent  rank  name

       Usage:

              ktGetTaxInfo [IDs ...] [< ID_list] > tax_info

              Command line example:

              ktGetTaxInfo A00001.1 "gi|2|emb|A00002.1|" 9606

              Fasta tag example:

              grep ">" sequence.fasta | ktGetTaxInfo

OPTIONS

       [-p]   Prepend tax info to the original lines (separated by tabs).

       [-a]   Append tax info to the original lines (separated by tabs).

       [-f] <integer>
              Field of accessions. [Default: '1']

       [-tax <string>
              Path to directory containing a taxonomy database to use.