NAME

       ktImportMETAREP-EC - explore hierarchical metagenomic data with zoomable pie charts

DESCRIPTION

              Creates  a  Krona  chart of abundances of EC (Enzyme Commission) numbers in METAREP
              data folders. By default, queries with no EC number will be ignored (see -i).

       ktImportMETAREP-EC \

              [options] \ metarep_folder_1[,name_1] \ [metarep_folder_2[,name_2]] \ ...

       metarep_folder
              Unpacked METAREP data folder. By default, separate datasets  will  be  created  for
              each input (see [-c]).

       name   A  name to show in the list of datasets in the Krona chart (if multiple input files
              are present and [-c] is not specified). By default, the basename of the  file  will
              be used.

       [-o <string>]
              Output file name. [Default: 'metarep-ec.krona.html']

       [-n <string>]
              Name of the highest level. [Default: 'root']

       [-c]   Combine  data  from  each  file,  rather than creating separate datasets within the
              chart.

       [-i]   Include a wedge for queries with no hits.

       [-d <integer>]
              Maximum depth of wedges to include in the chart.

       [-u <string>]
              URL of Krona resources to use  instead  of  bundling  them  with  the  chart  (e.g.
              "http://krona.sourceforge.net").  Reduces size of charts and allows updates, though
              charts will not work without access to this URL.

       [-qp <string>]
              Url to send query IDs to (instead of listing them) for each wedge.  The  query  IDs
              will  be  sent  as  a comma separated list in the POST variable "queries", with the
              current dataset index (from 0) in the POST variable "dataset". The url can  include
              additional variables encoded via GET.

       [-v]   Verbose.