NAME

       lambda2 - Lambda, the Local Aligner for Massive Biological DataA

SYNOPSIS

       lambda2 [OPTIONS] COMMAND [COMMAND-OPTIONS]

DESCRIPTION

       Lambda  is  a  local  aligner  optimized  for many query sequences and searches in protein
       space. It is compatible to BLAST, but much faster than BLAST  and  many  other  comparable
       tools.

       Detailed information is available in the wiki: <https://github.com/seqan/lambda/wiki>

REQUIRED ARGUMENTS

       COMMAND STRING
              The  sub-program  to  execute.  See  below.  One of searchp, searchn, mkindexp, and
              mkindexn.

OPTIONS

       -h, --help
              Display the help message.

       --version-check BOOL
              Turn this option off to disable version update notifications  of  the  application.
              One of 1, ON, TRUE, T, YES, 0, OFF, FALSE, F, and NO. Default: 1.

       --version
              Display version information.

       --copyright
              Display long copyright information.

AVAILABLE COMMANDS

       searchp  – Perform a protein search (BLASTP, BLASTX, TBLASTN, TBLASTX).

       searchn  – Perform a nucleotide search (BLASTN, MEGABLAST).

       mkindexp – Create an index for protein searches.

       mkindexn – Create an index for nucleotide searches.

       To view the help page for a specific command, simply run 'lambda command --help'.

LEGAL

       lambda2 Copyright: 2013-2019 Hannes Hauswedell, released under the GNU AGPL v3 (or later);
       2016-2019 Knut Reinert and Freie Universität Berlin, released under the 3-clause-BSDL
       SeqAn Copyright: 2006-2015 Knut Reinert, FU-Berlin; released under the 3-clause BSDL.
       In   your   academic   works   please   cite:    Hauswedell    et    al    (2014);    doi:
       10.1093/bioinformatics/btu439
       For full copyright and/or warranty information see --copyright.