NAME

       mauveAlignment2anchors - converts a Mauve alignment into Murasaki anchor format based on
       gapped alignment data (each gap triggers a new anchor). Note this refers to the Mauve
       alignment format, not the LAGAN .alignment file that Mauve also outputs.

SYNOPSIS

       mauveAlignment2anchors <input> [output]

OPTIONS

         --autoout -- create output file name automatically (on by default)
         --noautoout -- disable the above "autoout" option