NAME

       newcpgreport - Identify CpG islands in nucleotide sequence(s)

SYNOPSIS

       newcpgreport -sequence seqall -window integer -shift integer -minlen integer -minoe float
                    -minpc float -outfile outfile

       newcpgreport -help

DESCRIPTION

       newcpgreport is a command line program from EMBOSS (“the European Molecular Biology Open
       Software Suite”). It is part of the "Nucleic:CpG Islands" command group(s).

OPTIONS

   Input section
       -sequence seqall

   Required section
       -window integer
           Default value: 100

       -shift integer
           Default value: 1

       -minlen integer
           Default value: 200

       -minoe float
           Default value: 0.6

       -minpc float
           Default value: 50.

   Output section
       -outfile outfile

BUGS

       Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or
       directly to the EMBOSS developers
       (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

       newcpgreport is fully documented via the tfm(1) system.

AUTHOR

       Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
           Wrote the script used to autogenerate this manual page.

COPYRIGHT

       This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package.
       It can be redistributed under the same terms as EMBOSS itself.