NAME

       optimir - Integrating genetic variations in miRNA alignment

SYNOPSIS

       optimir [options]

DESCRIPTION

       OptimiR  is  a miRSeq data alignment workflow. It integrates genetic information to assess
       the impact of variants on miRNA expression.  OptimiR: A bioinformatics  pipeline  designed
       to detect and quantify miRNAs, isomiRs and polymiRs from miRSeq data, and study the impact
       of genetic variations on polymiRs' expression.

OPTIONS

   Basic options
       -h, --help
              Produce help message

   Subcommands
       process
              Process a single fastq file with the OptimiR workflow

       summarize
              Summarize results of previously processed samples

       libprep
              Only prepare small RNA alignment library sequences that integrates genetic variants
              (required before processing multiple samples in parallel)

SEE ALSO

       https://github.com/FlorianThibord/OptimiR

AUTHOR

       OptimiR was written by Florian Thibord.

                                            April 2019                                 OPTIMIR(1)