Provided by: libvcflib-tools_1.0.9+dfsg1-3build1_amd64 bug

NAME
       plotHaps


SYNOPSIS
DESCRIPTION
       plotHaps provides the formatted output that can be used with `bin/plotHaplotypes.R'.


OPTIONS
              Output : haplotype matrix and positions

              **plotHaps**  --target 0,1,2,3,4,5,6,7  --file my.phased.vcf.gz

              required: t,target     -- argument: a zero base comma separated list of target individuals corrisponding to VCF column s
              required: r,region     -- argument: a tabix compliant genomic range : "seqid:start-end" or "seqid"
              required: f,file       -- argument: proper formatted phased VCF file
              required: y,type       -- argument: genotype likelihood format: PL,GP,GP

              Type: statistics


EXIT VALUES
       0      Success

       not 0  Failure


SEE ALSO
       vcflib(1)


OTHER
LICENSE
       Copyright 2011-2023 (C) Erik Garrison and vcflib contributors.  MIT licensed.


AUTHORS
       Erik Garrison and vcflib contributors.