NAME

       prophet - Scan one or more sequences with a Gribskov or Henikoff profile

SYNOPSIS

       prophet -sequence seqall -infile infile -gapopen float -gapextend float -outfile align

       prophet -help

DESCRIPTION

       prophet is a command line program from EMBOSS (“the European Molecular Biology Open
       Software Suite”). It is part of the "Nucleic:Profiles,Protein:Profiles" command group(s).

OPTIONS

   Input section
       -sequence seqall

       -infile infile

   Required section
       -gapopen float
           Default value: 1.0

       -gapextend float
           Default value: 1.0

   Output section
       -outfile align

BUGS

       Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or
       directly to the EMBOSS developers
       (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

       prophet is fully documented via the tfm(1) system.

AUTHOR

       Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
           Wrote the script used to autogenerate this manual page.

COPYRIGHT

       This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package.
       It can be redistributed under the same terms as EMBOSS itself.