NAME

       pxbdfit - fit lineage diversification model to a tree

SYNOPSIS

       pxbdfit [OPTIONS]...

DESCRIPTION

       Fit   a   lineage  diversification  model  to  a  tree.   This  will  take  a  newick-  or
       nexus-formatted tree from a file or STDIN.

OPTIONS

       -t, --treef=FILE
              input treefile, STDIN otherwise

       -m, --model=STRING
              diversification model. either 'yule', 'bd' (default), or 'best'

       -o, --outf=FILE
              output file, STOUT otherwise

       -h, --help
              display this help and exit

       -V, --version
              display version and exit

       -C, --citation
              display phyx citation and exit

CITATION

       Brown, Joseph W., Joseph F. Walker, and Stephen A. Smith. 2017. Phyx:  phylogenetic  tools
       for unix. Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.

AUTHOR

       Written by Joseph W. Brown

REPORTING BUGS

       Report    bugs    to:    <https://github.com/FePhyFoFum/phyx/issues>   phyx   home   page:
       <https://github.com/FePhyFoFum/phyx>

COPYRIGHT

       Copyright © 2016-2024 FePhyFoFum License GPLv3