NAME

       pxbp - print out bipartitions found in treefiles

SYNOPSIS

       pxbp [OPTIONS]...

DESCRIPTION

       This  will  print out bipartitions found in treefile.  Trees are assumed rooted unless the
       -e argument is provided.  This will take a newick- or nexus-formatted tree from a file  or
       STDIN.

OPTIONS

       -t, --treef=FILE
              input treefile, STDIN otherwise

       -v, --verbose
              give more output

       -e, --edgeall
              force  edgewise  (not  node  - so when things are unrooted) and assume all taxa are
              present in all trees

       -u, --uniquetree
              output unique trees and *no* other output

       -m, --maptree=FILE
              put the bipart freq on the edges of this tree. This will create a  *.pxbpmapped.tre
              file.

       -c, --cutoff
              skip biparts that have support lower than this.

       -s, --suppress
              don't print all the output (maybe you use this with the maptree feature

       -o, --outf=FILE
              output file, STOUT otherwise

       -h, --help
              display this help and exit

       -V, --version
              display version and exit

       -C, --citation
              display phyx citation and exit

CITATION

       Brown,  Joseph  W., Joseph F. Walker, and Stephen A. Smith. 2017. Phyx: phylogenetic tools
       for unix. Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.

AUTHOR

       Written by Stephen A. Smith (blackrim)

REPORTING BUGS

       Report   bugs   to:   <https://github.com/FePhyFoFum/phyx/issues>    phyx    home    page:
       <https://github.com/FePhyFoFum/phyx>

COPYRIGHT

       Copyright © 2017-2024 FePhyFoFum License GPLv3