NAME

       pxcat - sequence file concatenation

SYNOPSIS

       pxcat [OPTIONS]... FILES

DESCRIPTION

       Sequence file concatenation.  Can use wildcards e.g.:

              pxcat -s *.phy -o my_cat_file.fa

   However, if the argument list is too long (shell limit), put filenames in a file:
              for x in *.phy

              do echo $x >> flist.txt

              done

   and call using the -f option:
              pxcat -f flist.txt -o my_cat_file.fa

       This  will take fasta, fastq, phylip, and nexus sequence formats.  Individual files may be
       of different formats.

OPTIONS

       -s, --seqf=FILE
              list of input sequence files (space delimited)

       -f, --flist=FILE
              file listing input files (one per line)

       -p, --partf=FILE
              output partition file, none otherwise

       -u, --uppercase
              export characters in uppercase

       -o, --outf=FILE
              output sequence file, STOUT otherwise

       -h, --help
              display this help and exit

       -V, --version
              display version and exit

       -C, --citation
              display phyx citation and exit

CITATION

       Brown, Joseph W., Joseph F. Walker, and Stephen A. Smith. 2017. Phyx:  phylogenetic  tools
       for unix. Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.

AUTHOR

       Written by Joseph F. Walker, Joseph W. Brown, Stephen A. Smith (blackrim)

REPORTING BUGS

       Report    bugs    to:    <https://github.com/FePhyFoFum/phyx/issues>   phyx   home   page:
       <https://github.com/FePhyFoFum/phyx>

COPYRIGHT

       Copyright © 2015-2024 FePhyFoFum License GPLv3