NAME

       pxrmk - remove two-degree internal nodes from a tree

SYNOPSIS

       pxrmk [OPTIONS]...

DESCRIPTION

       Remove  two-degree  internal  nodes ('knuckles') from a tree.  This will take a newick- or
       nexus-formatted tree from a file or STDIN.  Output is written in newick format.

OPTIONS

       -t, --treef=FILE
              input tree file, STDIN otherwise

       -o, --outf=FILE
              output tree file, STOUT otherwise

       -h, --help
              display this help and exit

       -V, --version
              display version and exit

       -C, --citation
              display phyx citation and exit

CITATION

       Brown, Joseph W., Joseph F. Walker, and Stephen A. Smith. 2017. Phyx:  phylogenetic  tools
       for unix. Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.

AUTHOR

       Written by Joseph W. Brown, Stephen A. Smith (blackrim)

REPORTING BUGS

       Report    bugs    to:    <https://github.com/FePhyFoFum/phyx/issues>   phyx   home   page:
       <https://github.com/FePhyFoFum/phyx>

COPYRIGHT

       Copyright © 2016-2024 FePhyFoFum License GPLv3