NAME

       reapr-facheck - checks IDs in fasta file

SYNOPSIS

       reapr facheck <in.fa> [out_prefix]

DESCRIPTION

       Checks that the names in the fasta file are ok. Things like trailing whitespace or
       characters (|':-) could break the pipeline.

       If out_prefix is not given, it will die when a bad ID is found. No output means everything
       is OK.

       If out_prefix is given, writes a new fasta file out_prefix.fa with new names, and
       out_prefix.info which has the mapping from old name to new name.

SEE ALSO

       reapr(1)

                                                                                 REAPR-FACHECK(1)