NAME

       surankco-training - training of random forest using contig features and contig scores

SYNOPSIS

       surankco-training [options]

DESCRIPTION

       Training of random forest using contig features from surankco-feature(1) and contig scores
       from surankco-score(1).

OPTIONS

       -f FEATURES, --features=FEATURES

              Indicate a list of surankco feature files (comma separated), correct  suffixes  are
              mandatory ("*.features.txt")

       -d DIRECTORY, --directory=DIRECTORY

              Indicate a directory containing surankco feature files ("*.features.txt")

       -o OUTPUT.FILENAME, --output.filename=OUTPUT.FILENAME

              Indicate  a  name  for  the  export  of  the  random  forest classifiers (default =
              "surankco_rfs.RData")

       -e EXPONENTIAL.QUANTILE, --exponential.quantile=EXPONENTIAL.QUANTILE

              Indicate an exponential distribution quantile to divide scores (default: 0.25)

       -m MANUAL.THRESHOLDS, --manual.thresholds=MANUAL.THRESHOLDS

              Indicate manual  thresholds  instead  of  quantiles,  one  per  score  each  (comma
              separated) in the same order as in the score file

       -h, --help

              Show this help message and exit

AUTHOR

       This  manpage was written by Andreas Tille for the Debian distribution and can be used for
       any other usage of the program.