NAME

       umis - tools for processing UMI RNA-tag data

SYNOPSIS

       umis [OPTIONS] COMMAND [ARGS]...

OPTIONS

       --help Show this message and exit.

   Commands:
       add_uid
              Adds UID:[samplebc cellbc umi] to readname for...

       bamtag Convert a BAM/SAM with fastqtransformed read names to...

       cb_filter
              Filters reads with non-matching barcodes Expects...

       cb_histogram
              Counts the number of reads for each cellular barcode...

       demultiplex_cells
              Demultiplex a fastqtransformed FASTQ file into a...

       demultiplex_samples
              Demultiplex a fastqtransformed FASTQ file into a...

       fastqtransform
              Transform input reads to the tagcounts compatible...

       fasttagcount
              Count up evidence for tagged molecules, this...

       kallisto
              Convert fastqtransformed file to output format...

       mb_filter
              Filters umis with non-ACGT bases Expects formatted...

       sb_filter
              Filters reads with non-matching sample barcodes...

       sparse Convert a CSV file to a sparse matrix with rows and...

       subset_bamfile
              Subset a SAM/BAM file, keeping only alignments from...

       tagcount
              Count up evidence for tagged molecules

       umi_histogram
              Counts the number of reads for each UMI Expects...

              version

AUTHOR

       This  manpage was written by Andreas Tille for the Debian distribution and can be used for
       any other usage of the program.